WormBase Tree Display for Variation: WBVar00178860

WBVar00178860 Evidence: Paper_evidence: WBPaper00037807
  Name: Public_name: WBVar00178860
    Other_name: haw46136
      cewivar00023903
      Y39A1A.1d.1:c.671-442G>C
      Y39A1A.1c.1:c.896-442G>C
      Y39A1A.1b.1:c.992-436G>C
      Y39A1A.1a.1:c.992-442G>C
    HGVSg: CHROMOSOME_III:g.10597568C>G
  Sequence_details: SMap: S_parent: Sequence: Y39A1A
    Flanking_sequences: tttggtttttttttcgatttttttc atatcaaatttttaataatttccag
    Mapping_target: Y39A1A
    Type_of_mutation: Substitution: C G
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain (25)
    Laboratory: RW
      AX
    Person: WBPerson1562
    Analysis: WGS_Hawaiian_Waterston
      WGS_De_Bono
      Million_mutation_project_reanalysis
    History: Acquires_merge: WBVar01333124
        WBVar01268091
    Status: Live
  Affects: Gene: WBGene00012641
    Transcript: Y39A1A.1d.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y39A1A.1d.1:c.671-442G>C
        Intron_number: 1/1
      Y39A1A.1a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y39A1A.1a.1:c.992-442G>C
        Intron_number: 4/5
      Y39A1A.1c.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y39A1A.1c.1:c.896-442G>C
        Intron_number: 3/4
      Y39A1A.1b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y39A1A.1b.1:c.992-436G>C
        Intron_number: 4/5
  Reference: WBPaper00037807
  Remark: [20081124 db] this Variation was previously named hw46136
  Method: WGS_Hawaiian_Waterston