WormBase Tree Display for Variation: WBVar00175596
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| WBVar00175596 | Name | Public_name | WBVar00175596 | ||
|---|---|---|---|---|---|
| Other_name (11) | |||||
| HGVSg | CHROMOSOME_II:g.11063523A>G | ||||
| Sequence_details | SMap | S_parent | Sequence | F45E10 | |
| Flanking_sequences | aaacaattaaatttagaaatttgat | atatggaaaatagcgcaaacattat | |||
| Mapping_target | F45E10 | ||||
| Type_of_mutation | Substitution | A | G | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
| WGS_De_Bono | |||||
| WGS_Hawaiian_Waterston | |||||
| Million_mutation_project_reanalysis | |||||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| SNP_Wicks | |||||
| History | Acquires_merge | WBVar01376377 | |||
| WBVar00244829 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00006788 | |||
| Transcript | F45E10.1b.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | F45E10.1b.1:c.1971-29T>C | ||||
| Intron_number | 14/22 | ||||
| F45E10.1a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F45E10.1a.1:c.1971-29T>C | ||||
| Intron_number | 15/23 | ||||
| F45E10.1f.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F45E10.1f.1:c.1047-29T>C | ||||
| Intron_number | 7/15 | ||||
| F45E10.1c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F45E10.1c.1:c.1971-29T>C | ||||
| Intron_number | 14/23 | ||||
| F45E10.1e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F45E10.1e.1:c.711-29T>C | ||||
| Intron_number | 6/14 | ||||
| F45E10.1d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F45E10.1d.1:c.1569-29T>C | ||||
| Intron_number | 12/20 | ||||
| F45E10.1g.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F45E10.1g.1:c.1971-29T>C | ||||
| Intron_number | 14/21 | ||||
| F45E10.1h.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F45E10.1h.1:c.1971-29T>C | ||||
| Intron_number | 14/21 | ||||
| Reference | WBPaper00004703 | ||||
| WBPaper00037807 | |||||
| Remark | [20081124 db] this Variation was previously named hw28846 | ||||
| Method | WGS_Hawaiian_Waterston |
