WormBase Tree Display for Variation: WBVar00173447
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| WBVar00173447 | Name | Public_name | WBVar00173447 | ||
|---|---|---|---|---|---|
| Other_name (12) | |||||
| HGVSg | CHROMOSOME_II:g.7509224A>C | ||||
| Sequence_details | SMap | S_parent | Sequence | C28F5 | |
| Flanking_sequences | tatgagctcctaacatttttcccgt | ttcaattttcaattcggttaaaatg | |||
| Mapping_target | C28F5 | ||||
| Type_of_mutation | Substitution | A | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (162) | |||||
| Laboratory | RW | ||||
| QX | |||||
| AX | |||||
| Person | WBPerson1562 | ||||
| WBPerson6900 | |||||
| WBPerson4037 | |||||
| WBPerson1730 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Pasadena_Quinlan | |||||
| WGS_Andersen | |||||
| History | Acquires_merge | WBVar01307937 | |||
| WBVar01241531 | |||||
| WBVar00551427 | |||||
| WBVar01373578 | |||||
| WBVar00225800 | |||||
| WBVar01438484 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00016184 | |||
| Transcript | C28F5.2c.2 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | C28F5.2c.2:c.-203-395T>G | ||||
| Intron_number | 1/5 | ||||
| C28F5.2c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C28F5.2c.1:c.-203-395T>G | ||||
| Intron_number | 2/7 | ||||
| C28F5.2b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C28F5.2b.1:c.52+70T>G | ||||
| Intron_number | 1/5 | ||||
| C28F5.2a.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C28F5.2a.2:c.134-395T>G | ||||
| Intron_number | 5/9 | ||||
| C28F5.2a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C28F5.2a.1:c.134-395T>G | ||||
| Intron_number | 3/7 | ||||
| C28F5.2c.3 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C28F5.2c.3:c.-204+70T>G | ||||
| Intron_number | 1/6 | ||||
| C28F5.2d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C28F5.2d.1:c.224-395T>G | ||||
| Intron_number | 4/7 | ||||
| C28F5.2e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C28F5.2e.1:c.134-395T>G | ||||
| Intron_number | 3/8 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00040707 | |||||
| WBPaper00037807 | |||||
| Remark | [20081124 db] this Variation was previously named hw26697 | ||||
| Method | WGS_Hawaiian_Waterston |
