WormBase Tree Display for Variation: WBVar00171824
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WBVar00171824 | Evidence | Paper_evidence | WBPaper00037807 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00171824 | |||
Other_name | haw25074 | ||||
cewivar00184498 | |||||
T27F7.2c.2:c.123-239A>G | |||||
T27F7.2c.1:c.123-239A>G | |||||
T27F7.2b.2:c.948-239A>G | |||||
T27F7.2a.1:c.978-239A>G | |||||
T27F7.2b.1:c.948-239A>G | |||||
HGVSg | CHROMOSOME_II:g.4985878A>G | ||||
Sequence_details | SMap | S_parent | Sequence | T27F7 | |
Flanking_sequences | ttgttttagtttaaccttatttaat | aaaccaaatgcagccagaatagaaa | |||
Mapping_target | T27F7 | ||||
Type_of_mutation | Substitution | A | G | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | WGS_De_Bono | ||
WGS_Hawaiian_Waterston | |||||
Million_mutation_project_reanalysis | |||||
Laboratory | RW | ||||
AX | |||||
Person | WBPerson1562 | ||||
Analysis | WGS_Hawaiian_Waterston | ||||
WGS_De_Bono | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar01371496 | |||
Status | Live | ||||
Affects | Gene | WBGene00020867 | |||
Transcript | T27F7.2c.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | T27F7.2c.1:c.123-239A>G | ||||
Intron_number | 2/5 | ||||
T27F7.2a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | T27F7.2a.1:c.978-239A>G | ||||
Intron_number | 8/13 | ||||
T27F7.2b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | T27F7.2b.1:c.948-239A>G | ||||
Intron_number | 8/13 | ||||
T27F7.2b.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | T27F7.2b.2:c.948-239A>G | ||||
Intron_number | 7/11 | ||||
T27F7.2c.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | T27F7.2c.2:c.123-239A>G | ||||
Intron_number | 1/5 | ||||
Reference | WBPaper00037807 | ||||
Remark | [20081124 db] this Variation was previously named hw25074 | ||||
Method | WGS_Hawaiian_Waterston |