WormBase Tree Display for Variation: WBVar00170874
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| WBVar00170874 | Name | Public_name | WBVar00170874 | ||
|---|---|---|---|---|---|
| Other_name (12) | |||||
| HGVSg | CHROMOSOME_II:g.4116545T>C | ||||
| Sequence_details | SMap | S_parent | Sequence | T08H4 | |
| Flanking_sequences | ctagaaaaatataatactcggccac | agtttagctttaatttttttatcga | |||
| Mapping_target | T08H4 | ||||
| Type_of_mutation | Substitution | T | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (38) | |||||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| WBPerson6900 | |||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Pasadena_Quinlan | |||||
| History | Acquires_merge | WBVar01370188 | |||
| WBVar00222544 | |||||
| WBVar00549700 | |||||
| WBVar01304989 | |||||
| WBVar01238655 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00006476 | |||
| Transcript | T08H4.1a.4 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | T08H4.1a.4:c.-80-3712T>C | ||||
| Intron_number | 3/14 | ||||
| T08H4.1a.3 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T08H4.1a.3:c.-80-3712T>C | ||||
| Intron_number | 4/15 | ||||
| T08H4.1b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T08H4.1b.1:c.356-3712T>C | ||||
| Intron_number | 5/14 | ||||
| T08H4.1b.3 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T08H4.1b.3:c.356-3712T>C | ||||
| Intron_number | 4/13 | ||||
| T08H4.1a.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T08H4.1a.2:c.-80-3712T>C | ||||
| Intron_number | 3/14 | ||||
| T08H4.1a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T08H4.1a.1:c.-80-3712T>C | ||||
| Intron_number | 4/15 | ||||
| T08H4.1b.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T08H4.1b.2:c.356-3712T>C | ||||
| Intron_number | 5/14 | ||||
| T08H4.1c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T08H4.1c.1:c.782-3712T>C | ||||
| Intron_number | 4/13 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| Remark | [20081124 db] this Variation was previously named hw24124 | ||||
| Method | WGS_Hawaiian_Waterston |
