WormBase Tree Display for Variation: WBVar00164658
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| WBVar00164658 | Name | Public_name | WBVar00164658 | ||
|---|---|---|---|---|---|
| Other_name | haw17908 | ||||
| haw125019 | |||||
| cewivar00080155 | |||||
| F56D12.4d.1:c.1997-284C>T | |||||
| F56D12.4f.1:c.113-284C>T | |||||
| F56D12.4e.1:c.575-284C>T | |||||
| F56D12.4c.1:c.113-284C>T | |||||
| F56D12.4a.1:c.1997-284C>T | |||||
| F56D12.4b.1:c.575-284C>T | |||||
| HGVSg | CHROMOSOME_II:g.1345786C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | F56D12 | |
| Flanking_sequences | aagaaatttaaatccagcgcgtttt | ataccccgagaatcactttttacgc | |||
| Mapping_target | F56D12 | ||||
| Type_of_mutation | Substitution | C | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
| WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00004602 | From_analysis | WGS_De_Bono | |||
| WGS_Hawaiian_Waterston | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00006625 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022850 | From_analysis | WGS_De_Bono | |||
| Million_mutation_project_reanalysis | |||||
| WBStrain00023665 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027652 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00031113 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar01294602 | |||
| WBVar01360279 | |||||
| WBVar00544884 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00002176 | |||
| Transcript | F56D12.4e.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | F56D12.4e.1:c.575-284C>T | ||||
| Intron_number | 3/10 | ||||
| F56D12.4a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F56D12.4a.1:c.1997-284C>T | ||||
| Intron_number | 12/20 | ||||
| F56D12.4b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F56D12.4b.1:c.575-284C>T | ||||
| Intron_number | 3/11 | ||||
| F56D12.4f.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F56D12.4f.1:c.113-284C>T | ||||
| Intron_number | 1/8 | ||||
| F56D12.4d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F56D12.4d.1:c.1997-284C>T | ||||
| Intron_number | 12/20 | ||||
| F56D12.4c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F56D12.4c.1:c.113-284C>T | ||||
| Intron_number | 1/8 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| Remark | [20081124 db] this Variation was previously named hw17908 | ||||
| Method | WGS_Hawaiian_Waterston |
