WormBase Tree Display for Variation: WBVar00164464
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| WBVar00164464 | Name | Public_name | WBVar00164464 | ||
|---|---|---|---|---|---|
| Other_name (13) | |||||
| HGVSg | CHROMOSOME_II:g.1227641C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | F47F6 | |
| Flanking_sequences | gacaaagaagtttcgaaaaaaaatt | ttcctcaaaattaaaattttttgaa | |||
| Mapping_target | F47F6 | ||||
| Type_of_mutation | Substitution | C | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | SNP_Swan | ||
| WGS_De_Bono | |||||
| WGS_Hawaiian_Waterston | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| SNP_Swan | |||||
| History | Acquires_merge | WBVar00544735 | |||
| WBVar00267906 | |||||
| WBVar01359968 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00018734 | |||
| Transcript | F53A10.2d.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | F53A10.2d.1:c.834+124C>T | ||||
| Intron_number | 5/9 | ||||
| F53A10.2b.4 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F53A10.2b.4:c.-82+124C>T | ||||
| Intron_number | 2/8 | ||||
| F53A10.2c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F53A10.2c.1:c.1224+124C>T | ||||
| Intron_number | 4/8 | ||||
| F53A10.2b.3 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F53A10.2b.3:c.-82+124C>T | ||||
| Intron_number | 5/11 | ||||
| F53A10.2b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F53A10.2b.1:c.-82+124C>T | ||||
| Intron_number | 6/12 | ||||
| F53A10.2e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F53A10.2e.1:c.615+124C>T | ||||
| Intron_number | 3/7 | ||||
| F53A10.2f.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F53A10.2f.1:c.549+124C>T | ||||
| Intron_number | 2/6 | ||||
| F53A10.2b.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F53A10.2b.2:c.-82+124C>T | ||||
| Intron_number | 4/10 | ||||
| F53A10.2a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F53A10.2a.1:c.1017+124C>T | ||||
| Intron_number | 7/12 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| WBPaper00005369 | |||||
| Remark | [20081124 db] this Variation was previously named hw17714 | ||||
| Method | WGS_Hawaiian_Waterston |
