WormBase Tree Display for Variation: WBVar00164446
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WBVar00164446 | Evidence | Paper_evidence | WBPaper00037807 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00164446 | |||
Other_name | haw17696 | ||||
cewivar00176761 | |||||
F53A10.2b.3:c.-786-4060C>T | |||||
F53A10.2a.1:c.313-4060C>T | |||||
F53A10.2b.1:c.-786-4060C>T | |||||
F53A10.2d.1:c.130-4060C>T | |||||
HGVSg | CHROMOSOME_II:g.1221708C>T | ||||
Sequence_details | SMap | S_parent | Sequence | F53A10 | |
Flanking_sequences | cacccagttcttcgaccatttaccc | actattttctgaccaattacagatt | |||
Mapping_target | F53A10 | ||||
Type_of_mutation | Substitution | C | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | WGS_De_Bono | ||
WGS_Hawaiian_Waterston | |||||
Million_mutation_project_reanalysis | |||||
WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
Laboratory | RW | ||||
AX | |||||
Person | WBPerson1562 | ||||
Analysis | WGS_Hawaiian_Waterston | ||||
WGS_De_Bono | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar01359941 | |||
Status | Live | ||||
Affects | Gene | WBGene00018734 | |||
Transcript | F53A10.2d.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | F53A10.2d.1:c.130-4060C>T | ||||
Intron_number | 2/9 | ||||
F53A10.2b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F53A10.2b.1:c.-786-4060C>T | ||||
Intron_number | 3/12 | ||||
F53A10.2b.3 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F53A10.2b.3:c.-786-4060C>T | ||||
Intron_number | 2/11 | ||||
F53A10.2a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F53A10.2a.1:c.313-4060C>T | ||||
Intron_number | 4/12 | ||||
Reference | WBPaper00037807 | ||||
Remark | [20081124 db] this Variation was previously named hw17696 | ||||
Method | WGS_Hawaiian_Waterston |