WormBase Tree Display for Variation: WBVar00162590
expand all nodes | collapse all nodes | view schema
WBVar00162590 | Name | Public_name | WBVar00162590 | ||
---|---|---|---|---|---|
Other_name | haw15840 | ||||
haw123430 | |||||
cewivar00005206 | |||||
F32A7.3b.1:c.-927+124T>C | |||||
F32A7.3b.2:c.-219+124T>C | |||||
F32A7.3c.1:c.124+124T>C | |||||
F32A7.3a.1:c.124+124T>C | |||||
HGVSg | CHROMOSOME_I:g.14834574A>G | ||||
Sequence_details | SMap | S_parent | Sequence | F32A7 | |
Flanking_sequences | gcaataaaaatgacggcgcgaatag | tcatcatcttgatgagtgatgaatg | |||
Mapping_target | F32A7 | ||||
Type_of_mutation | Substitution | A | G | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (16) | |||||
Laboratory | RW | ||||
AX | |||||
Person | WBPerson1562 | ||||
WBPerson4037 | |||||
Analysis | WGS_Hawaiian_Waterston | ||||
WGS_De_Bono | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar01357128 | |||
WBVar01231876 | |||||
WBVar00543295 | |||||
WBVar01290560 | |||||
Status | Live | ||||
Affects | Gene | WBGene00009304 | |||
Transcript | F32A7.3b.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | F32A7.3b.1:c.-927+124T>C | ||||
Intron_number | 1/11 | ||||
F32A7.3a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F32A7.3a.1:c.124+124T>C | ||||
Intron_number | 2/11 | ||||
F32A7.3c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F32A7.3c.1:c.124+124T>C | ||||
Intron_number | 1/10 | ||||
F32A7.3b.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F32A7.3b.2:c.-219+124T>C | ||||
Intron_number | 1/12 | ||||
Reference | WBPaper00038208 | ||||
WBPaper00037807 | |||||
Remark | [20081124 db] this Variation was previously named hw15840 | ||||
Method | WGS_Hawaiian_Waterston |