WormBase Tree Display for Variation: WBVar00153647
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| WBVar00153647 | Name | Public_name | WBVar00153647 | ||
|---|---|---|---|---|---|
| Other_name (15) | |||||
| HGVSg | CHROMOSOME_I:g.5552023T>C | ||||
| Sequence_details | SMap | S_parent | Sequence | M01A10 | |
| Flanking_sequences | ttgtaccatttaaagtacgaggagc | ccagtaaaaagaccacctggatttg | |||
| Mapping_target | M01A10 | ||||
| Type_of_mutation | Substitution | T | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (19) | |||||
| Laboratory | RW | ||||
| QX | |||||
| AX | |||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| WBPerson1730 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Andersen | |||||
| History | Acquires_merge | WBVar00537066 | |||
| WBVar01431644 | |||||
| WBVar01282822 | |||||
| WBVar01344458 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00006594 | |||
| Transcript | M01A10.2g.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | M01A10.2g.1:c.1740T>C | ||||
| HGVSp | CE50290:p.Ala580= | ||||
| cDNA_position | 1847 | ||||
| CDS_position | 1740 | ||||
| Protein_position | 580 | ||||
| Exon_number | 12/26 | ||||
| Codon_change | gcT/gcC | ||||
| Amino_acid_change | A | ||||
| M01A10.2f.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | M01A10.2f.1:c.1740T>C | ||||
| HGVSp | CE41686:p.Ala580= | ||||
| cDNA_position | 1849 | ||||
| CDS_position | 1740 | ||||
| Protein_position | 580 | ||||
| Exon_number | 12/26 | ||||
| Codon_change | gcT/gcC | ||||
| Amino_acid_change | A | ||||
| M01A10.2i.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | M01A10.2i.1:c.1740T>C | ||||
| HGVSp | CE50363:p.Ala580= | ||||
| cDNA_position | 1740 | ||||
| CDS_position | 1740 | ||||
| Protein_position | 580 | ||||
| Exon_number | 11/24 | ||||
| Codon_change | gcT/gcC | ||||
| Amino_acid_change | A | ||||
| M01A10.2h.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | M01A10.2h.1:c.1740T>C | ||||
| HGVSp | CE50232:p.Ala580= | ||||
| cDNA_position | 1847 | ||||
| CDS_position | 1740 | ||||
| Protein_position | 580 | ||||
| Exon_number | 12/25 | ||||
| Codon_change | gcT/gcC | ||||
| Amino_acid_change | A | ||||
| M01A10.2e.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | M01A10.2e.1:c.1740T>C | ||||
| HGVSp | CE41685:p.Ala580= | ||||
| cDNA_position | 1846 | ||||
| CDS_position | 1740 | ||||
| Protein_position | 580 | ||||
| Exon_number | 12/26 | ||||
| Codon_change | gcT/gcC | ||||
| Amino_acid_change | A | ||||
| M01A10.2a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | M01A10.2a.1:c.1740T>C | ||||
| HGVSp | CE40307:p.Ala580= | ||||
| cDNA_position | 1847 | ||||
| CDS_position | 1740 | ||||
| Protein_position | 580 | ||||
| Exon_number | 12/25 | ||||
| Codon_change | gcT/gcC | ||||
| Amino_acid_change | A | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00040707 | |||||
| WBPaper00037807 | |||||
| Remark | [20081124 db] this Variation was previously named hw6897 | ||||
| Method | WGS_Hawaiian_Waterston |
