WormBase Tree Display for Variation: WBVar00145668
expand all nodes | collapse all nodes | view schema
| WBVar00145668 | Evidence | Paper_evidence | WBPaper00032446 | ||
|---|---|---|---|---|---|
| Name | Public_name | gk261 | |||
| Other_name | C14A11.3a.1:c.220-22_458+57del | ||||
| C14A11.3b.1:c.1993-22_2231+57del | |||||
| C14A11.3c.1:c.220-22_458+57del | |||||
| HGVSg | CHROMOSOME_X:g.2796740_2797057del | ||||
| Sequence_details | SMap | S_parent | Sequence | C14A11 | |
| Flanking_sequences | gtatttgatttatttcttgtctagatatgt | ggcgaataccgaaaattggaaaaaaaacaa | |||
| Mapping_target | C14A11 | ||||
| Type_of_mutation | Deletion | ||||
| PCR_product | gk261_external | ||||
| gk261_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00035827 | ||||
| WBStrain00040403 | |||||
| WBStrain00040404 | |||||
| WBStrain00040405 | |||||
| WBStrain00040406 | |||||
| Laboratory | VC | ||||
| Person | WBPerson427 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00006496 | |||
| WBGene00198449 | |||||
| Transcript | C14A11.11 | VEP_consequence | non_coding_transcript_exon_variant | ||
| VEP_impact | MODIFIER | ||||
| cDNA_position | ?-102 | ||||
| Exon_number | 1/1 | ||||
| C14A11.3a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | C14A11.3a.1:c.220-22_458+57del | ||||
| Intron_number | 3-4/7 | ||||
| Exon_number | 4/8 | ||||
| C14A11.3c.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | C14A11.3c.1:c.220-22_458+57del | ||||
| Intron_number | 3-4/7 | ||||
| Exon_number | 4/8 | ||||
| C14A11.3b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | C14A11.3b.1:c.1993-22_2231+57del | ||||
| Intron_number | 19-20/23 | ||||
| Exon_number | 20/24 | ||||
| Interactor | WBInteraction000504195 | ||||
| WBInteraction000504198 | |||||
| WBInteraction000504199 | |||||
| WBInteraction000504200 | |||||
| Isolation | Mutagen | TMP/UV | |||
| Description | Phenotype_not_observed | WBPhenotype:0001413 | Paper_evidence | WBPaper00040813 | |
| Curator_confirmed | WBPerson2706 | ||||
| WBPhenotype:0001652 | Paper_evidence | WBPaper00032446 | |||
| Curator_confirmed | WBPerson2021 | ||||
| Reference | WBPaper00040813 | ||||
| WBPaper00032446 | |||||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
