WormBase Tree Display for Variation: WBVar00145412
expand all nodes | collapse all nodes | view schema
| WBVar00145412 | Evidence | Paper_evidence | WBPaper00024331 | ||||
|---|---|---|---|---|---|---|---|
| Name | Public_name | ga80 | |||||
| Other_name | CE08973:p.Gln97Ter | ||||||
| C54D1.6.1:c.289C>T | |||||||
| HGVSg | CHROMOSOME_X:g.7170149G>A | ||||||
| Sequence_details | SMap | S_parent | Sequence | C54D1 | |||
| Flanking_sequences | gactatgagccgatccccactctttcagat | aagtaagaccatttcatatcaaaatgcgct | |||||
| Mapping_target | C54D1 | ||||||
| Type_of_mutation | Substitution | c | t | Paper_evidence | WBPaper00024331 | ||
| SeqStatus | Sequenced | ||||||
| Variation_type | Allele | ||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00007434 | ||||||
| WBStrain00023612 | |||||||
| WBStrain00034113 | |||||||
| WBStrain00034115 | |||||||
| WBStrain00034116 | |||||||
| Laboratory | SD | ||||||
| Status | Live | ||||||
| Affects | Gene | WBGene00000238 | |||||
| Transcript | C54D1.6.1 | VEP_consequence | stop_gained,splice_region_variant | ||||
| VEP_impact | HIGH | ||||||
| HGVSc | C54D1.6.1:c.289C>T | ||||||
| HGVSp | CE08973:p.Gln97Ter | ||||||
| cDNA_position | 298 | ||||||
| CDS_position | 289 | ||||||
| Protein_position | 97 | ||||||
| Exon_number | 4/19 | ||||||
| Codon_change | Caa/Taa | ||||||
| Amino_acid_change | Q/* | ||||||
| Interactor (211) | |||||||
| Isolation | Mutagen | EMS | |||||
| Genetics | Interpolated_map_position | X | -1.80941 | ||||
| Description | Phenotype (32) | ||||||
| Phenotype_not_observed (15) | |||||||
| Reference (30) | |||||||
| Method | Substitution_allele |
