WormBase Tree Display for Variation: WBVar00144296
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WBVar00144296 | Name | Public_name | e1777 | ||||||
---|---|---|---|---|---|---|---|---|---|
Other_name | e1777am | ||||||||
C37F5.1b.1:c.805C>T | |||||||||
CE31440:p.Gln309Ter | |||||||||
CE27833:p.Gln269Ter | |||||||||
C37F5.1a.1:c.925C>T | |||||||||
HGVSg | CHROMOSOME_IV:g.2277404G>A | ||||||||
Sequence_details | SMap | S_parent | Sequence | C37F5 | |||||
Flanking_sequences | ccgtcaatctcgtctccacttctgatgctt | agcaacaccatcaaaactccccgctattcc | |||||||
Mapping_target | C37F5 | ||||||||
Type_of_mutation | Substitution | c | t | Paper_evidence | WBPaper00002352 | ||||
SeqStatus | Sequenced | ||||||||
Variation_type | Allele | ||||||||
Origin | Species | Caenorhabditis elegans | |||||||
Strain | WBStrain00005499 | ||||||||
WBStrain00026770 | |||||||||
Laboratory | CB | ||||||||
Status | Live | ||||||||
Affects | Gene | WBGene00002990 | |||||||
Transcript | C37F5.1a.1 | VEP_consequence | stop_gained | ||||||
VEP_impact | HIGH | ||||||||
HGVSc | C37F5.1a.1:c.925C>T | ||||||||
HGVSp | CE31440:p.Gln309Ter | ||||||||
cDNA_position | 925 | ||||||||
CDS_position | 925 | ||||||||
Protein_position | 309 | ||||||||
Exon_number | 5/7 | ||||||||
Codon_change | Cag/Tag | ||||||||
Amino_acid_change | Q/* | ||||||||
C37F5.1b.1 | VEP_consequence | stop_gained | |||||||
VEP_impact | HIGH | ||||||||
HGVSc | C37F5.1b.1:c.805C>T | ||||||||
HGVSp | CE27833:p.Gln269Ter | ||||||||
cDNA_position | 813 | ||||||||
CDS_position | 805 | ||||||||
Protein_position | 269 | ||||||||
Exon_number | 4/6 | ||||||||
Codon_change | Cag/Tag | ||||||||
Amino_acid_change | Q/* | ||||||||
Interactor | WBInteraction000001242 | ||||||||
WBInteraction000502389 | |||||||||
WBInteraction000504230 | |||||||||
WBInteraction000541772 | |||||||||
WBInteraction000542312 | |||||||||
WBInteraction000542313 | |||||||||
WBInteraction000542314 | |||||||||
Genetics | Interpolated_map_position | IV | -8.49046 | ||||||
Mapping_data | In_2_point | 3277 | |||||||
5217 | |||||||||
6179 | |||||||||
6185 | |||||||||
In_multi_point | 1270 | ||||||||
1842 | |||||||||
2438 | |||||||||
2440 | |||||||||
Description | Phenotype (8) | ||||||||
Phenotype_not_observed | WBPhenotype:0000717 | Paper_evidence | WBPaper00032994 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
Remark | Mutants showed wildtype dat-1::gfp expression | Paper_evidence | WBPaper00032994 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
Phenotype_assay | Genotype | vtIs1 (dat-1::gfp;rol6) | Paper_evidence | WBPaper00032994 | |||||
Curator_confirmed | WBPerson2021 | ||||||||
WBPhenotype:0001060 | Paper_evidence | WBPaper00003955 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0001061 | Paper_evidence | WBPaper00003955 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
EQ_annotations | Anatomy_term | WBbt:0005670 | PATO:0000460 | Paper_evidence | WBPaper00003955 | ||||
Curator_confirmed | WBPerson712 | ||||||||
Reference | WBPaper00027035 | ||||||||
WBPaper00035553 | |||||||||
WBPaper00032994 | |||||||||
WBPaper00013779 | |||||||||
WBPaper00012430 | |||||||||
WBPaper00000762 | |||||||||
WBPaper00014073 | |||||||||
WBPaper00013862 | |||||||||
WBPaper00003955 | |||||||||
Method | Substitution_allele |