WormBase Tree Display for Variation: WBVar00144296
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| WBVar00144296 | Name | Public_name | e1777 | ||||
|---|---|---|---|---|---|---|---|
| Other_name | e1777am | ||||||
| C37F5.1b.1:c.805C>T | |||||||
| CE31440:p.Gln309Ter | |||||||
| CE27833:p.Gln269Ter | |||||||
| C37F5.1a.1:c.925C>T | |||||||
| HGVSg | CHROMOSOME_IV:g.2277404G>A | ||||||
| Sequence_details | SMap | S_parent | Sequence | C37F5 | |||
| Flanking_sequences | ccgtcaatctcgtctccacttctgatgctt | agcaacaccatcaaaactccccgctattcc | |||||
| Mapping_target | C37F5 | ||||||
| Type_of_mutation | Substitution | c | t | Paper_evidence | WBPaper00002352 | ||
| SeqStatus | Sequenced | ||||||
| Variation_type | Allele | ||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00005499 | ||||||
| WBStrain00026770 | |||||||
| Laboratory | CB | ||||||
| Status | Live | ||||||
| Affects | Gene | WBGene00002990 | |||||
| Transcript | C37F5.1a.1 | VEP_consequence | stop_gained | ||||
| VEP_impact | HIGH | ||||||
| HGVSc | C37F5.1a.1:c.925C>T | ||||||
| HGVSp | CE31440:p.Gln309Ter | ||||||
| cDNA_position | 925 | ||||||
| CDS_position | 925 | ||||||
| Protein_position | 309 | ||||||
| Exon_number | 5/7 | ||||||
| Codon_change | Cag/Tag | ||||||
| Amino_acid_change | Q/* | ||||||
| C37F5.1b.1 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | C37F5.1b.1:c.805C>T | ||||||
| HGVSp | CE27833:p.Gln269Ter | ||||||
| cDNA_position | 813 | ||||||
| CDS_position | 805 | ||||||
| Protein_position | 269 | ||||||
| Exon_number | 4/6 | ||||||
| Codon_change | Cag/Tag | ||||||
| Amino_acid_change | Q/* | ||||||
| Interactor | WBInteraction000001242 | ||||||
| WBInteraction000502389 | |||||||
| WBInteraction000504230 | |||||||
| WBInteraction000541772 | |||||||
| WBInteraction000542312 | |||||||
| WBInteraction000542313 | |||||||
| WBInteraction000542314 | |||||||
| Genetics | Interpolated_map_position | IV | -8.49046 | ||||
| Mapping_data | In_2_point | 3277 | |||||
| 5217 | |||||||
| 6179 | |||||||
| 6185 | |||||||
| In_multi_point | 1270 | ||||||
| 1842 | |||||||
| 2438 | |||||||
| 2440 | |||||||
| Description (2) | |||||||
| Reference | WBPaper00027035 | ||||||
| WBPaper00035553 | |||||||
| WBPaper00032994 | |||||||
| WBPaper00013779 | |||||||
| WBPaper00012430 | |||||||
| WBPaper00000762 | |||||||
| WBPaper00014073 | |||||||
| WBPaper00013862 | |||||||
| WBPaper00003955 | |||||||
| Method | Substitution_allele |
