WormBase Tree Display for Variation: WBVar00143953
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WBVar00143953 | Evidence | Person_evidence | WBPerson25803 | ||
---|---|---|---|---|---|
Name | Public_name | e1376 | |||
Other_name (16) | |||||
HGVSg | CHROMOSOME_X:g.822069del | ||||
Sequence_details | SMap | S_parent | Sequence | F25E2 | |
Flanking_sequences | ACCATACGTCCCAACAAGGCAGTCATCAAC | AGGGCACCAAGGTCAGGTACCGAATGATCC | |||
Mapping_target | F25E2 | ||||
Type_of_mutation | Deletion | ||||
SeqStatus | Sequenced | ||||
Variation_type | Allele | ||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004312 | ||||
WBStrain00004377 | |||||
WBStrain00026945 | |||||
WBStrain00030757 | |||||
WBStrain00035151 | |||||
Laboratory | CB | ||||
Status | Live | ||||
Affects | Gene | WBGene00000899 | |||
Transcript | F25E2.5g.1 | VEP_consequence | frameshift_variant | ||
VEP_impact | HIGH | ||||
HGVSc | F25E2.5g.1:c.1277del | ||||
HGVSp | CE50852:p.Pro426GlnfsTer51 | ||||
cDNA_position | 1277 | ||||
CDS_position | 1277 | ||||
Protein_position | 426 | ||||
Exon_number | 5/12 | ||||
Codon_change | cCa/ca | ||||
Amino_acid_change | P/X | ||||
F25E2.5d.1 | VEP_consequence | frameshift_variant | |||
VEP_impact | HIGH | ||||
HGVSc | F25E2.5d.1:c.1613del | ||||
HGVSp | CE50706:p.Pro538GlnfsTer51 | ||||
cDNA_position | 1613 | ||||
CDS_position | 1613 | ||||
Protein_position | 538 | ||||
Exon_number | 8/15 | ||||
Codon_change | cCa/ca | ||||
Amino_acid_change | P/X | ||||
F25E2.5e.1 | VEP_consequence | frameshift_variant | |||
VEP_impact | HIGH | ||||
HGVSc | F25E2.5e.1:c.1511del | ||||
HGVSp | CE50732:p.Pro504GlnfsTer51 | ||||
cDNA_position | 1560 | ||||
CDS_position | 1511 | ||||
Protein_position | 504 | ||||
Exon_number | 8/16 | ||||
Codon_change | cCa/ca | ||||
Amino_acid_change | P/X | ||||
F25E2.5b.1 | VEP_consequence | frameshift_variant | |||
VEP_impact | HIGH | ||||
HGVSc | F25E2.5b.1:c.1520del | ||||
HGVSp | CE30963:p.Pro507GlnfsTer51 | ||||
cDNA_position | 1567 | ||||
CDS_position | 1520 | ||||
Protein_position | 507 | ||||
Exon_number | 8/16 | ||||
Codon_change | cCa/ca | ||||
Amino_acid_change | P/X | ||||
F25E2.5f.1 | VEP_consequence | frameshift_variant | |||
VEP_impact | HIGH | ||||
HGVSc | F25E2.5f.1:c.1502del | ||||
HGVSp | CE28003:p.Pro501GlnfsTer51 | ||||
cDNA_position | 1550 | ||||
CDS_position | 1502 | ||||
Protein_position | 501 | ||||
Exon_number | 8/16 | ||||
Codon_change | cCa/ca | ||||
Amino_acid_change | P/X | ||||
F25E2.5a.1 | VEP_consequence | frameshift_variant | |||
VEP_impact | HIGH | ||||
HGVSc | F25E2.5a.1:c.1604del | ||||
HGVSp | CE28002:p.Pro535GlnfsTer51 | ||||
cDNA_position | 1653 | ||||
CDS_position | 1604 | ||||
Protein_position | 535 | ||||
Exon_number | 9/17 | ||||
Codon_change | cCa/ca | ||||
Amino_acid_change | P/X | ||||
F25E2.5c.1 | VEP_consequence | frameshift_variant | |||
VEP_impact | HIGH | ||||
HGVSc | F25E2.5c.1:c.1316del | ||||
HGVSp | CE26364:p.Pro439GlnfsTer51 | ||||
cDNA_position | 1321 | ||||
CDS_position | 1316 | ||||
Protein_position | 439 | ||||
Exon_number | 6/14 | ||||
Codon_change | cCa/ca | ||||
Amino_acid_change | P/X | ||||
F25E2.5h.1 | VEP_consequence | frameshift_variant | |||
VEP_impact | HIGH | ||||
HGVSc | F25E2.5h.1:c.1268del | ||||
HGVSp | CE50691:p.Pro423GlnfsTer51 | ||||
cDNA_position | 1268 | ||||
CDS_position | 1268 | ||||
Protein_position | 423 | ||||
Exon_number | 5/12 | ||||
Codon_change | cCa/ca | ||||
Amino_acid_change | P/X | ||||
Interactor (59) | |||||
Genetics | Interpolated_map_position | X | -19.4991 | ||
Mapping_data | In_2_point | 299 | |||
413 | |||||
414 | |||||
Description (2) | |||||
Reference (17) | |||||
Method | Deletion_allele |