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WormBase Tree Display for Variation: WBVar00142817

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Name Class

WBVar00142817EvidencePaper_evidenceWBPaper00005054
NamePublic_namedh7
Other_nameCE53632:p.Trp404Ter
CE27206:p.Trp440Ter
CE30451:p.Trp425Ter
T13C5.1c.1:c.1211_1212delinsAA
T13C5.1a.1:c.1319_1320delinsAA
T13C5.1b.1:c.1274_1275delinsAA
HGVSgCHROMOSOME_X:g.6200105_6200106delinsAA
Sequence_detailsSMapS_parentSequenceT13C5
Flanking_sequencesaaatccaacgtttggctaatgttttgccatgctattccccacaagtaagtggcattatta
Mapping_targetT13C5
Type_of_mutationSubstitutionggrr
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
LaboratoryAA
StatusLive
AffectsGeneWBGene00000905
TranscriptT13C5.1c.1VEP_consequencestop_gained
VEP_impactHIGH
HGVScT13C5.1c.1:c.1211_1212delinsAA
HGVSpCE53632:p.Trp404Ter
cDNA_position1211-1212
CDS_position1211-1212
Protein_position404
Exon_number7/10
Codon_changetGG/tAA
Amino_acid_changeW/*
T13C5.1b.1VEP_consequencestop_gained
VEP_impactHIGH
HGVScT13C5.1b.1:c.1274_1275delinsAA
HGVSpCE30451:p.Trp425Ter
cDNA_position1274-1275
CDS_position1274-1275
Protein_position425
Exon_number8/10
Codon_changetGG/tAA
Amino_acid_changeW/*
T13C5.1a.1VEP_consequencestop_gained
VEP_impactHIGH
HGVScT13C5.1a.1:c.1319_1320delinsAA
HGVSpCE27206:p.Trp440Ter
cDNA_position1380-1381
CDS_position1319-1320
Protein_position440
Exon_number10/13
Codon_changetGG/tAA
Amino_acid_changeW/*
GeneticsInterpolated_map_positionX-3.45871
ReferenceWBPaper00005054
RemarkManually curated Gene associations preserved as a text remark so that VEP is the canonical predictor of consequence: WBGene00000905 Amber_UAG_or_Opal_UGA W(440) to stopPaper_evidenceWBPaper00005054
MethodSubstitution_allele