WormBase Tree Display for Variation: WBVar00130467
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| WBVar00130467 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00130467 | ||||
| Other_name | cbs65988 | |||||
| cb65988 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | chrIV:g.4348703C>T | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc4260b | ||
| Flanking_sequences | acggaaaattttccgaaaaatattcggaaa | ttttttctcgaaataatcatgctgcgttcaaagtgaagaggaaatctctactttgtatagttgaaacgggtgcaacagtaacccaagcgcggcgagacccgcaatcggtgtcgatttacggggtcggttt | ||||
| Mapping_target | cb25.fpc4260b | |||||
| Type_of_mutation | Substitution | A | T | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 223 162 138 117 115 102 82 23 17 11 10 | ||
| TTTAAA | AhaIII, DraI | 647 353 | ||||
| CCTNAGG | AocI, AxyI, Bse21I, Bsu36I, CvnI, Eco81I, SauI | 1000 | ||||
| CTNAG | BstDEI, DdeI | 901 99 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 387 154 108 103 82 64 52 19 14 9 8 | ||||
| TCNGA | Hpy188I | 406 302 123 61 24 19 15 13 12 11 8 6 | ||||
| TTAA | MseI, Tru1I, Tru9I | 543 134 93 89 52 40 28 16 5 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 175 138 115 102 88 85 40 37 33 25 23 22 20 18 17 15 11 11 11 10 4 | ||||
| Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 223 162 139 117 115 101 82 22 18 11 10 | |||
| TTTAAA | AhaIII, DraI | 646 354 | ||||
| CCTNAGG | AocI, AxyI, Bse21I, Bsu36I, CvnI, Eco81I, SauI | 805 195 | ||||
| CTNAG | BstDEI, DdeI | 805 99 96 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 374 154 108 103 82 64 52 19 14 13 9 8 | ||||
| TCNGA | Hpy188I | 406 302 123 61 24 19 17 12 11 11 8 6 | ||||
| TTAA | MseI, Tru1I, Tru9I | 543 125 93 89 52 40 28 15 9 6 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 175 139 115 101 88 85 40 37 33 25 22 22 20 18 18 15 11 11 11 10 4 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00040471 | ||||
| Transcript | CBG21779a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG21779a.1:c.358-7897G>A | |||||
| Intron_number | 3/9 | |||||
| CBG21779b.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG21779b.1:c.810+2522G>A | |||||
| Intron_number | 1/6 | |||||
| CBG21779c.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG21779c.1:c.810+2522G>A | |||||
| Intron_number | 1/7 | |||||
| CBG21779d.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG21779d.1:c.810+2522G>A | |||||
| Intron_number | 1/7 | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
