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WormBase Tree Display for Gene: WBGene00040471

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Name Class

WBGene00040471SMapS_parentSequencecb25.fpc4260b
IdentityVersion4
NameCGC_nameCbr-nrfl-1From_analysisInferred_from_orthology
Sequence_nameCBG21779
Molecular_name (18)
Other_nameCbr-tag-60From_analysisInferred_from_orthology
Cbr-mpz-2From_analysisInferred_from_orthology
CBG_21779Accession_evidenceNDBHE600966
Public_nameCbr-nrfl-1
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:10WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:05WBPerson2970Name_changeCGC_nameCbr-tag-60
307 Feb 2012 16:36:56WBPerson2970Name_changeCGC_nameCbr-mpz-2
Other_nameCbr-tag-60
420 Jul 2012 14:22:06WBPerson2970Name_changeCGC_nameCbr-nrfl-1
Other_nameCbr-mpz-2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnrfl
Allele (27)
RNASeq_FPKMWBls:0000002129.682From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
131.379From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
137.506From_analysisRNASeq.briggsae.WBls:0000002.control_mean
151.458From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
140.631From_analysisRNASeq.briggsae.WBls:0000002.control_mean
140.693From_analysisRNASeq.briggsae.WBls:0000002.control_median
150.006From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000312.4162From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
17.7262From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
23.0362From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
17.0109From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
17.4878From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000452.4186From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
55.2157From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
58.0128From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
55.726From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
60.6159From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
61.5743From_analysisRNASeq.briggsae.WBls:0000004.control_mean
81.0983From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:0000027114.951From_analysisRNASeq.briggsae.WBls:0000027.control_mean
134.534From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
156.468From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
53.8505From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
145.501From_analysisRNASeq.briggsae.WBls:0000027.control_median
170.84From_analysisRNASeq.briggsae.WBls:0000027.control_mean
338.508From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:0000035217.116From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:0000038120.843From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
129.046From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
187.438From_analysisRNASeq.briggsae.WBls:0000038.control_median
188.317From_analysisRNASeq.briggsae.WBls:0000038.control_mean
245.83From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
257.549From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
WBls:000004140.4661From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
43.2329From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
47.298From_analysisRNASeq.briggsae.WBls:0000041.control_median
51.1693From_analysisRNASeq.briggsae.WBls:0000041.control_mean
51.3632From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
69.6151From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
48.1165From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
49.7398From_analysisRNASeq.briggsae.WBls:0000041.control_median
52.4534From_analysisRNASeq.briggsae.WBls:0000041.control_mean
61.9263From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:0000063102.197From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
103.937From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
119.537From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
126.705From_analysisRNASeq.briggsae.WBls:0000063.control_mean
144.92From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
162.935From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
111.737From_analysisRNASeq.briggsae.WBls:0000063.control_median
120.018From_analysisRNASeq.briggsae.WBls:0000063.control_mean
86.5827From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:0000101118.927From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
120.843From_analysisRNASeq.briggsae.total_over_all_stages.control_median
108.477From_analysisRNASeq.briggsae.total_over_all_stages.control_median
114.434From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (26)
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: PDZ superfamily and PDZ domain. Is an ortholog of C. elegans nrfl-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG21779a
CBG21779b
CBG21779c
CBG21779d
CBG21779e
CBG21779f
Corresponding_CDS_historyCBG21779:bp194
CBG21779:bp255
Corresponding_transcriptCBG21779a.1
CBG21779b.1
CBG21779c.1
CBG21779d.1
CBG21779e.1
CBG21779f.1
Other_sequence (69)
Experimental_infoExpr_patternExpr1063935
Microarray_resultsGPL8303_CB6_WBGene00040471_A
GPL14143_CBG21779_514-573_0.695_145_C
GPL14143_CBG21779_1175-1234_0.956_1_B
GPL14143_CBG21779_1291-1350_0.908_21_A
MethodGene