WormBase Tree Display for Variation: WBVar00130466
expand all nodes | collapse all nodes | view schema
WBVar00130466 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
WBPaper00055507 | ||||||
Name | Public_name | WBVar00130466 | ||||
Other_name | cbs65987 | |||||
cb65987 | Paper_evidence | WBPaper00055507 | ||||
HGVSg | ||||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc4260b | ||
Flanking_sequences | tccgacggaaaattttccgaaaaatattcggaaaattttttctcgaaataatcatgctgcgttcaaagtgaagaggaaatctctactttgtatagttgaaacgggtgcaacagtaacccaagcgcggcga | acccgcaatcggtgtcgatttacggggtcggttta | ||||
Mapping_target | cb25.fpc4260b | |||||
Type_of_mutation | Substitution | G | T | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 223 162 138 115 102 82 76 23 21 21 17 10 10 | ||
TTTAAA | AhaIII, DraI | 551 449 | ||||
CCTNAGG | AocI, AxyI, Bse21I, Bsu36I, CvnI, Eco81I, SauI | 1000 | ||||
CTNAG | BstDEI, DdeI | 805 195 | ||||
TCGA | EsaBC3I, TaqI, TthHB8I | 453 108 103 82 64 58 52 19 18 14 12 9 8 | ||||
TCNGA | Hpy188I | 310 302 214 61 24 19 15 13 12 11 8 6 5 | ||||
TTAA | MseI, Tru1I, Tru9I | 536 230 93 52 40 28 16 5 | ||||
AATT | Sse9I, TasI, Tsp509I, TspEI | 175 138 115 102 85 59 40 37 33 25 23 22 21 20 17 15 11 11 11 10 10 10 6 4 | ||||
Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 223 162 139 115 101 82 76 22 21 21 18 10 10 | |||
TTTAAA | AhaIII, DraI | 550 450 | ||||
CCTNAGG | AocI, AxyI, Bse21I, Bsu36I, CvnI, Eco81I, SauI | 709 291 | ||||
CTNAG | BstDEI, DdeI | 709 195 96 | ||||
TCGA | EsaBC3I, TaqI, TthHB8I | 440 108 103 82 64 58 52 19 18 14 13 12 9 8 | ||||
TCNGA | Hpy188I | 310 302 214 61 24 19 17 12 11 11 8 6 5 | ||||
TTAA | MseI, Tru1I, Tru9I | 536 125 105 93 52 40 28 15 6 | ||||
AATT | Sse9I, TasI, Tsp509I, TspEI | 175 139 115 101 85 59 40 37 33 25 22 22 21 20 18 15 11 11 11 10 10 10 6 4 | ||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis briggsae | ||||
Strain | WBStrain00041077 | |||||
Laboratory | CP | |||||
Person | WBPerson3706 | |||||
WBPerson227 | ||||||
WBPerson225 | ||||||
Status | Live | |||||
Affects | Gene | WBGene00040471 | ||||
Transcript | CBG21779a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | |||||
Intron_number | 3/9 | |||||
CBG21779b.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
Intron_number | 1/6 | |||||
CBG21779c.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
Intron_number | 1/7 | |||||
CBG21779d.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
Intron_number | 1/7 | |||||
Reference | WBPaper00030778 | |||||
WBPaper00055507 | ||||||
Remark | Predicted by: ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |