WormBase Tree Display for Variation: WBVar00108770
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| WBVar00108770 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar00108770 | ||||
| Other_name | cbs44291 | |||||
| HGVSg | chrI:g.5381686C>T | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc0071c2 | ||
| Flanking_sequences | gtttaatcgaattcgccaagctcttgaaactggacaccctgacgacatga | tgagttttattaaagcgaaaatgaagttatattttgtttttcaggtcaaa | ||||
| Mapping_target | cb25.fpc0071c2 | |||||
| Type_of_mutation | Substitution | G | A | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 542 171 157 130 | ||
| GWGCWC | Alw21I, AspHI, Bbv12I, BsiHKAI, HgiAI | 598 402 | ||||
| GRGCYC | BanII, Eco24I, EcoT38I, FriOI, HgiJII | 598 402 | ||||
| GDGCHC | BmyI, Bsp1286I, MhlI, SduI | 598 402 | ||||
| CTNAG | BstDEI, DdeI | 432 394 174 | ||||
| GAGCTC | Ecl136II, EcoICRI, Psp124BI, SacI, SstI | 600 400 | ||||
| CAC | HindI | 292 168 78 75 67 48 39 36 35 35 33 26 19 17 17 7 5 3 | ||||
| TCNGA | Hpy188I | 291 290 87 74 52 50 41 36 34 31 14 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 389 153 113 85 64 60 44 41 36 6 5 4 | ||||
| Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 542 301 157 | |||
| GWGCWC | Alw21I, AspHI, Bbv12I, BsiHKAI, HgiAI | 1000 | ||||
| GRGCYC | BanII, Eco24I, EcoT38I, FriOI, HgiJII | 1000 | ||||
| GDGCHC | BmyI, Bsp1286I, MhlI, SduI | 1000 | ||||
| CTNAG | BstDEI, DdeI | 826 174 | ||||
| GAGCTC | Ecl136II, EcoICRI, Psp124BI, SacI, SstI | 1000 | ||||
| CAC | HindI | 292 168 92 78 67 48 39 36 35 35 33 26 19 15 7 5 3 2 | ||||
| TCNGA | Hpy188I | 332 290 87 74 52 50 36 34 31 14 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 389 153 149 113 60 44 41 36 6 5 4 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00026596 | ||||
| Transcript | CBG03815.1 | VEP_consequence | splice_donor_variant | |||
| VEP_impact | HIGH | |||||
| HGVSc | CBG03815.1:c.1768+1G>A | |||||
| Intron_number | 12/15 | |||||
| Reference | WBPaper00030778 | |||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
