WormBase Tree Display for Variation: WBVar00107950
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| WBVar00107950 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar00107950 | ||||
| Other_name | cbs43471 | |||||
| HGVSg | chrII:g.7958974C>T | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc0058 | ||
| Flanking_sequences | aaagatatcaaaaagttgtcaactaataaaattttttatgatatcagcaa | atttgattagttaaccactttttgatatttctcacagaaaatgagataaa | ||||
| Mapping_target | cb25.fpc0058 | |||||
| Type_of_mutation | Substitution | C | T | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | TCGA | EsaBC3I, TaqI, TthHB8I | 473 277 182 45 23 | ||
| CAC | HindI | 112 110 105 99 85 69 58 42 39 38 33 33 30 23 23 21 17 17 16 9 8 4 4 2 2 1 | ||||
| TCNNGA | Hpy178III, Hpy188III | 387 313 270 30 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 252 200 126 82 66 57 55 33 24 23 23 16 10 8 7 6 6 6 | ||||
| AATATT | SspI | 627 373 | ||||
| Polymorphic_strain_digest | TCGA | EsaBC3I, TaqI, TthHB8I | 518 277 182 23 | |||
| CAC | HindI | 112 110 105 99 85 69 42 42 39 38 33 33 30 23 23 21 17 17 16 16 9 8 4 4 2 2 1 | ||||
| TCNNGA | Hpy178III, Hpy188III | 583 387 30 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 255 252 126 82 66 57 33 24 23 23 16 10 8 7 6 6 6 | ||||
| AATATT | SspI | 499 373 128 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00025929 | ||||
| Transcript | CBG02975a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG02975a.1:c.305-1716G>A | |||||
| Intron_number | 5/25 | |||||
| CBG02975b.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG02975b.1:c.305-1716G>A | |||||
| Intron_number | 4/21 | |||||
| CBG02975c.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG02975c.1:c.305-1716G>A | |||||
| Intron_number | 5/24 | |||||
| CBG02975d.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG02975d.1:c.305-1716G>A | |||||
| Intron_number | 5/23 | |||||
| CBG02975e.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG02975e.1:c.305-1716G>A | |||||
| Intron_number | 5/24 | |||||
| Reference | WBPaper00030778 | |||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
