WormBase Tree Display for Variation: WBVar00107947
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| WBVar00107947 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00107947 | ||||
| Other_name | cbs43468 | |||||
| cb43468 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | chrII:g.7959127T>C | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc0058 | ||
| Flanking_sequences | tacgttttgatatatttttcagcaa | cgagatatatgggctcaaagttgga | ||||
| Mapping_target | cb25.fpc0058 | |||||
| Type_of_mutation | Substitution | T | C | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | TCGA | EsaBC3I, TaqI, TthHB8I | 473 285 145 45 29 23 | ||
| CAC | HindI | 186 112 110 105 85 69 58 42 39 38 30 23 21 20 17 16 9 8 4 4 2 2 | ||||
| TCNNGA | Hpy178III, Hpy188III | 313 270 234 183 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 252 200 178 82 55 42 41 33 24 23 23 16 10 8 7 6 | ||||
| AATATT | SspI | 780 220 | ||||
| Polymorphic_strain_digest | TCGA | EsaBC3I, TaqI, TthHB8I | 518 285 145 29 23 | |||
| CAC | HindI | 186 112 110 105 85 69 42 42 39 38 30 23 21 20 17 16 16 9 8 4 4 2 2 | ||||
| TCNNGA | Hpy178III, Hpy188III | 583 234 183 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 255 252 178 82 42 41 33 24 23 23 16 10 8 7 6 | ||||
| AATATT | SspI | 652 220 128 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00025929 | ||||
| Transcript | CBG02975a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG02975a.1:c.305-1869A>G | |||||
| Intron_number | 5/25 | |||||
| CBG02975b.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG02975b.1:c.305-1869A>G | |||||
| Intron_number | 4/21 | |||||
| CBG02975c.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG02975c.1:c.305-1869A>G | |||||
| Intron_number | 5/24 | |||||
| CBG02975d.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG02975d.1:c.305-1869A>G | |||||
| Intron_number | 5/23 | |||||
| CBG02975e.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG02975e.1:c.305-1869A>G | |||||
| Intron_number | 5/24 | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
