WormBase Tree Display for Variation: WBVar00107945

WBVar00107945 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00107945
    Other_name: cbs43466
      cb43466 Paper_evidence: WBPaper00055507
    HGVSg: chrII:g.7966994A>T
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0058
    Flanking_sequences: cttttcctcttcaaacccatctctc tcgaacgtaacaatataattgttgg
    Mapping_target: cb25.fpc0058
    Type_of_mutation: Substitution: A T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: TTCGAA AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI 736 228 36
      Polymorphic_strain_digest: TTCGAA AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI 496 240 228 36
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00025929
    Transcript: CBG02975a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG02975a.1:c.55-206T>A
        Intron_number: 2/25
      CBG02975b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG02975b.1:c.55-206T>A
        Intron_number: 1/21
      CBG02975c.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG02975c.1:c.55-206T>A
        Intron_number: 2/24
      CBG02975d.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG02975d.1:c.55-206T>A
        Intron_number: 2/23
      CBG02975e.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG02975e.1:c.55-206T>A
        Intron_number: 2/24
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP