WormBase Tree Display for Variation: WBVar00105873
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WBVar00105873 | Name | Public_name | WBVar00105873 | ||
---|---|---|---|---|---|
Other_name | pas10732 | ||||
snp_F37H8[11] | |||||
haw28904 | |||||
cewivar00094975 | |||||
T06D8.1e.1:c.-51+137G>A | |||||
T06D8.1i.1:c.-51+137G>A | |||||
T06D8.1a.1:c.-51+137G>A | |||||
HGVSg | CHROMOSOME_II:g.11203463G>A | ||||
Sequence_details | SMap | S_parent | Sequence | F37H8 | |
Flanking_sequences | tcatctagaaattgtgcccgcctctctagaatgtcgaacaaatctttaattcttacagttttgcactcaacaaagggagtgcgtgcgccgctcctccacgaatcgaatatttgcggggacgtctggcgtggatcacgataatttgggccaaagacactaaaaaggtaggtattgtaagatgtacttgccaagggcgaaaagatgatgttttagaattagacaactagagagacacagttttgtggaattttggggggaaattcttgaaacacggtgaacattaatttttcatgggttcgg | aaacatttaggatcttctatggttaaggaacggttttctaagacttttttcgtaggccggcaaatttttttctttagttaggtgcctgcctgcctagcctgcacctcggcagtaggcgggtagacattttttttgttcattaataatagtcttacttttaaaaatcttgatttccagtataacaccttgttaaaaaattaaagtttgaaaattttttatttcgtttcactgagcgaaatctttttttaatttttcttattcacaaattttcaaaaccgtatttttgagactaaaatctac | |||
Mapping_target | F37H8 | ||||
Type_of_mutation | Substitution | G | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (16) | |||||
Laboratory | AX | ||||
RW | |||||
Person | WBPerson6900 | ||||
WBPerson1562 | |||||
Analysis | WGS_Pasadena_Quinlan | ||||
WGS_De_Bono | |||||
Million_mutation_project_reanalysis | |||||
SNP_Wicks | |||||
WGS_Hawaiian_Waterston | |||||
History | Acquires_merge | WBVar00175654 | |||
WBVar01376463 | |||||
WBVar01244554 | |||||
WBVar00244628 | |||||
Status | Live | ||||
Affects | Gene | WBGene00011522 | |||
Transcript | T06D8.1e.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | T06D8.1e.1:c.-51+137G>A | ||||
Intron_number | 1/21 | ||||
T06D8.1i.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | T06D8.1i.1:c.-51+137G>A | ||||
Intron_number | 1/23 | ||||
T06D8.1a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | T06D8.1a.1:c.-51+137G>A | ||||
Intron_number | 1/26 | ||||
Reference | WBPaper00004703 | ||||
WBPaper00037807 | |||||
Method | WGS_Pasadena_Quinlan |