WormBase Tree Display for Variation: WBVar00098970
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| WBVar00098970 | Name | Public_name | WBVar00098970 | ||
|---|---|---|---|---|---|
| Other_name | pas3829 | ||||
| cewivar00057668 | |||||
| T10A3.1b.1:c.1594+13A>G | |||||
| T10A3.1e.1:c.1600+7A>G | |||||
| T10A3.1f.1:c.1594+13A>G | |||||
| T10A3.1c.1:c.1600+7A>G | |||||
| T10A3.1a.1:c.1594+13A>G | |||||
| T10A3.1d.1:c.1594+13A>G | |||||
| HGVSg | CHROMOSOME_X:g.7276769T>C | ||||
| Sequence_details | SMap | S_parent | Sequence | T10A3 | |
| Flanking_sequences | tgccaacaaatctccgccagatatgctccctgttccaaaatgatcatttctcgatggtgacaaggacagcgatttgtcacgccttcgattagcttgcatgtctaaacccccttggtaagaccccttcagtaaagcatgtgatttacttttcagcacgctgtttccgctcaagacaccgccaccaccactgccgcctacaccagcgcccaacgacgatgaatccgagtttttatgatcgccataaatatatcgaaggaggtctgaaaaactcatcaaaatgtcaacatgggatttcaagag | acgcacacaaacccttctcagaattgcattcctcggacaacctctgcacattcgacgctcccatatcatcatgaaatgcggttttcccaccagaggccacaactgctgacgtagacatcttcaaagtgttaccaccgcctccagcaataatatcctcttcagaagatgacattgatcgaagttgccttcaaacaattactttgaacaaataaaatgaagaagaatgtatgacaaaaaatgcagtttatgtgaaattgaactactgatgaagagcgaaaaaagctaaatgaggcaatgctc | |||
| Mapping_target | T10A3 | ||||
| Type_of_mutation | Substitution | T | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (28) | |||||
| Person | WBPerson6900 | ||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00006750 | |||
| Transcript | T10A3.1c.1 | VEP_consequence | splice_region_variant,intron_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | T10A3.1c.1:c.1600+7A>G | ||||
| Intron_number | 12/28 | ||||
| T10A3.1d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T10A3.1d.1:c.1594+13A>G | ||||
| Intron_number | 12/27 | ||||
| T10A3.1e.1 | VEP_consequence | splice_region_variant,intron_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | T10A3.1e.1:c.1600+7A>G | ||||
| Intron_number | 12/27 | ||||
| T10A3.1b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T10A3.1b.1:c.1594+13A>G | ||||
| Intron_number | 12/27 | ||||
| T10A3.1a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T10A3.1a.1:c.1594+13A>G | ||||
| Intron_number | 13/27 | ||||
| T10A3.1f.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T10A3.1f.1:c.1594+13A>G | ||||
| Intron_number | 12/26 | ||||
| Method | WGS_Pasadena_Quinlan |
