WormBase Tree Display for Variation: WBVar00095961
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WBVar00095961 | Name | Public_name | WBVar00095961 | ||
---|---|---|---|---|---|
Other_name | pas820 | ||||
cewivar00077734 | |||||
CE51164:p.Leu104= | |||||
T07D3.4a.1:c.865C>T | |||||
CE13361:p.Leu289= | |||||
T07D3.4b.1:c.310C>T | |||||
HGVSg | CHROMOSOME_II:g.890129C>T | ||||
Sequence_details | SMap | S_parent | Sequence | T07D3 | |
Flanking_sequences | gtttgacatgtacccattccttaacggcggaacatttctcggctggtaccgtgagtgctctatcattccgcacactaccgacatggatttatcggtctttgcgaaggattataacccaatctacgtggaattacttcacagctactggaatccgtctagtttcgaagtttggcgaatgctgggcatggtatggctttcgaaaaaagttgaaaacgaaaaaatcaaagaatttaggttgaggattctttcgagatcactatacaaacgaaaaagtggttcgagtacccaattgacttgttt | taatgtatgaaggaatcgaaaatgggaaacttacccatcattgggtgggcggaattgccagtgagttactgtagggggtactgtacaagatactgtagggggtagggtacgatagaggtactgtggggtaactataaggttactgtacaagatcttgtgagggtactgtagacgtactgtaaatttcaattttgtcaaattccagccgacggcaccaaatacaagttcacctaccctatctacgatccttggtgtgcagcggatcttcacggtcatattttctgggtctcctgtaatcca | |||
Mapping_target | T07D3 | ||||
Type_of_mutation | Substitution | C | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | |||
Person | WBPerson6900 | ||||
Analysis | WGS_Pasadena_Quinlan | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00020307 | |||
Transcript | T07D3.4b.1 | VEP_consequence | synonymous_variant | ||
VEP_impact | LOW | ||||
HGVSc | T07D3.4b.1:c.310C>T | ||||
HGVSp | CE51164:p.Leu104= | ||||
cDNA_position | 310 | ||||
CDS_position | 310 | ||||
Protein_position | 104 | ||||
Exon_number | 2/4 | ||||
Codon_change | Cta/Tta | ||||
Amino_acid_change | L | ||||
T07D3.4a.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | T07D3.4a.1:c.865C>T | ||||
HGVSp | CE13361:p.Leu289= | ||||
cDNA_position | 1008 | ||||
CDS_position | 865 | ||||
Protein_position | 289 | ||||
Exon_number | 8/11 | ||||
Codon_change | Cta/Tta | ||||
Amino_acid_change | L | ||||
Method | WGS_Pasadena_Quinlan |