WormBase Tree Display for Variation: WBVar00095101
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| WBVar00095101 | Evidence | Paper_evidence | WBPaper00006369 | ||
|---|---|---|---|---|---|
| Name | Public_name | oz240 | |||
| Other_name | Y53C12B.3b.1:c.1705C>T | ||||
| CE54262:p.Gln587Ter | |||||
| CE54289:p.Gln584Ter | |||||
| CE19224:p.Gln566Ter | |||||
| Y53C12B.3e.1:c.1357C>T | |||||
| Y53C12B.3a.1:c.1696C>T | |||||
| Y53C12B.3c.1:c.1759C>T | |||||
| CE18413:p.Gln569Ter | |||||
| Y53C12B.3d.1:c.1750C>T | |||||
| CE54300:p.Gln453Ter | |||||
| HGVSg | CHROMOSOME_II:g.9748860C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | Y53C12B | |
| Flanking_sequences | ggataccaacattctcgtcaaaattctaat | aaagctacaattcttctcaaagttatccac | |||
| Mapping_target | Y53C12B | ||||
| Type_of_mutation | Substitution | c | t | ||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Laboratory | BS | ||||
| Status | Live | ||||
| Affects | Gene | WBGene00003785 | |||
| Transcript | Y53C12B.3e.1 | VEP_consequence | stop_gained | ||
| VEP_impact | HIGH | ||||
| HGVSc | Y53C12B.3e.1:c.1357C>T | ||||
| HGVSp | CE54300:p.Gln453Ter | ||||
| cDNA_position | 1357 | ||||
| CDS_position | 1357 | ||||
| Protein_position | 453 | ||||
| Exon_number | 4/6 | ||||
| Codon_change | Caa/Taa | ||||
| Amino_acid_change | Q/* | ||||
| Y53C12B.3d.1 | VEP_consequence | stop_gained | |||
| VEP_impact | HIGH | ||||
| HGVSc | Y53C12B.3d.1:c.1750C>T | ||||
| HGVSp | CE54289:p.Gln584Ter | ||||
| cDNA_position | 1750 | ||||
| CDS_position | 1750 | ||||
| Protein_position | 584 | ||||
| Exon_number | 6/9 | ||||
| Codon_change | Caa/Taa | ||||
| Amino_acid_change | Q/* | ||||
| Y53C12B.3b.1 | VEP_consequence | stop_gained | |||
| VEP_impact | HIGH | ||||
| HGVSc | Y53C12B.3b.1:c.1705C>T | ||||
| HGVSp | CE18413:p.Gln569Ter | ||||
| cDNA_position | 1724 | ||||
| CDS_position | 1705 | ||||
| Protein_position | 569 | ||||
| Exon_number | 6/9 | ||||
| Codon_change | Caa/Taa | ||||
| Amino_acid_change | Q/* | ||||
| Y53C12B.3c.1 | VEP_consequence | stop_gained | |||
| VEP_impact | HIGH | ||||
| HGVSc | Y53C12B.3c.1:c.1759C>T | ||||
| HGVSp | CE54262:p.Gln587Ter | ||||
| cDNA_position | 1910 | ||||
| CDS_position | 1759 | ||||
| Protein_position | 587 | ||||
| Exon_number | 7/10 | ||||
| Codon_change | Caa/Taa | ||||
| Amino_acid_change | Q/* | ||||
| Y53C12B.3a.1 | VEP_consequence | stop_gained | |||
| VEP_impact | HIGH | ||||
| HGVSc | Y53C12B.3a.1:c.1696C>T | ||||
| HGVSp | CE19224:p.Gln566Ter | ||||
| cDNA_position | 1728 | ||||
| CDS_position | 1696 | ||||
| Protein_position | 566 | ||||
| Exon_number | 6/9 | ||||
| Codon_change | Caa/Taa | ||||
| Amino_acid_change | Q/* | ||||
| Genetics | Interpolated_map_position | II | 1.70869 | ||
| Reference | WBPaper00006369 | ||||
| Method | Substitution_allele |
