WormBase Tree Display for Variation: WBVar00093768
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| WBVar00093768 | Name | Public_name | ok2660 | ||
|---|---|---|---|---|---|
| Other_name | F22E10.3.1:c.3003_3690del | ||||
| F16H9.2b.1:c.35-38738_35-38051del | |||||
| CE03262:p.Met1002ArgfsTer37 | |||||
| F16H9.2a.1:c.-23-38738_-23-38051del | |||||
| HGVSg | CHROMOSOME_X:g.12745354_12746041del | ||||
| Sequence_details | SMap | S_parent | Sequence | F22E10 | |
| Flanking_sequences | gaccaaagctctggcaattgcaattctctg | aaagattgagttagactgtaattgatggct | |||
| Mapping_target | F22E10 | ||||
| Type_of_mutation | Deletion | ||||
| PCR_product | ok2660_external | ||||
| ok2660_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00032692 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00004008 | |||
| WBGene00008901 | |||||
| Transcript | F16H9.2b.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | F16H9.2b.1:c.35-38738_35-38051del | ||||
| Intron_number | 1/3 | ||||
| F16H9.2a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F16H9.2a.1:c.-23-38738_-23-38051del | ||||
| Intron_number | 1/4 | ||||
| F22E10.3.1 | VEP_consequence | frameshift_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | F22E10.3.1:c.3003_3690del | ||||
| HGVSp | CE03262:p.Met1002ArgfsTer37 | ||||
| cDNA_position | 3028-3715 | ||||
| CDS_position | 3003-3690 | ||||
| Protein_position | 1001-1230 | ||||
| Exon_number | 8/10 | ||||
| Codon_change | ttCATGTACTTCATGATGTGTTTTACATATGCTGTTGGTATCAGAATTATTTATCAAGGAGACAAATCTTCCGATGACACTTTCAAGGGAATCATTGCAATGATGTTGGGTGCCGTTGCAGTCATGAATTCGGCACAATACTTCCCAGAATTTGTAAAGGCTAAAACTGCAGCTGGAATGTTGTTCAACATTATCTACAGAAAACCTAGAACAGGAGACTTAATGGAAGGAGATCGCCCTGAAATTAGAGGAAACATTCTCTTTGAAAATGTCAAATTCTCGTATCCACAACGACCATTGCAACCAATTATGAAAGGACTTCAATGGACAGCACTTCGCGGACAAACTGTTGCTCTTGTCGGGCCATCCGGATCCGGTAAAAGTACGAACATTGGTATGCTCGAACGATTCTACGATGTTACTGGCGGAGCACTTCGAATTGATGGACAAGACATTCGAAAATTGTCACTGTTCCATCTCAGAACACAAATGGCGCTGGTCGGCCAAGAGCCTCGTCTTTTCGCAGGAACCATCCGCGAGAACGTGTGCCTTGGGTTGAAGGATGTGCCACTTGAAAAGATCAATCAAGCCTTAGAACTTGCCAATGCTAACAGATTCCTTGCCAACTTGCCAGCCGGAATTGACACAGATGTAGGAGAAAAAGGAGGACAATTGTCGGGAGGTCAGAAA/tt | ||||
| Amino_acid_change | FMYFMMCFTYAVGIRIIYQGDKSSDDTFKGIIAMMLGAVAVMNSAQYFPEFVKAKTAAGMLFNIIYRKPRTGDLMEGDRPEIRGNILFENVKFSYPQRPLQPIMKGLQWTALRGQTVALVGPSGSGKSTNIGMLERFYDVTGGALRIDGQDIRKLSLFHLRTQMALVGQEPRLFAGTIRENVCLGLKDVPLEKINQALELANANRFLANLPAGIDTDVGEKGGQLSGGQK/X | ||||
| Isolation | Mutagen | EMS | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
