WormBase Tree Display for Variation: WBVar00093445

WBVar00093445 Name: Public_name: ok2285
    Other_name: F45E4.3e.1:c.-27-119_2264delinsATCA
      F45E4.3c.1:c.4207-119_6497delinsATCA
      F45E4.3a.1:c.23047-119_25337delinsATCA
      F45E4.3b.1:c.23047-119_25337delinsATCA
      F45E4.3d.1:c.4207-119_6497delinsATCA
    HGVSg: CHROMOSOME_IV:g.7620896_7623305delinsATCA
  Sequence_details: SMap: S_parent: Sequence: F45E4
    Flanking_sequences: tttgagatatcaaacgatcggaaactagta ccgacagtatggagccgcaccacctccaac
    Mapping_target: F45E4
    Type_of_mutation: Insertion: ATCA
      Deletion
    PCR_product: ok2285_external
      ok2285_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00032468
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00018468
    Transcript: F45E4.3c.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F45E4.3c.1:c.4207-119_6497delinsATCA
        cDNA_position: ?-6497
        CDS_position: ?-6497
        Protein_position: ?-2166
        Intron_number: 17/17
        Exon_number: 18/18
      F45E4.3d.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F45E4.3d.1:c.4207-119_6497delinsATCA
        cDNA_position: ?-6497
        CDS_position: ?-6497
        Protein_position: ?-2166
        Intron_number: 17/24
        Exon_number: 18/25
      F45E4.3e.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F45E4.3e.1:c.-27-119_2264delinsATCA
        cDNA_position: ?-2339
        CDS_position: ?-2264
        Protein_position: ?-755
        Intron_number: 1/10
        Exon_number: 2-3/11
      F45E4.3b.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F45E4.3b.1:c.23047-119_25337delinsATCA
        cDNA_position: ?-25337
        CDS_position: ?-25337
        Protein_position: ?-8446
        Intron_number: 32/32
        Exon_number: 33/33
      F45E4.3a.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F45E4.3a.1:c.23047-119_25337delinsATCA
        cDNA_position: ?-25337
        CDS_position: ?-25337
        Protein_position: ?-8446
        Intron_number: 32/40
        Exon_number: 33/41
      F45E4.3f.1 VEP_consequence: coding_sequence_variant,5_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: ?-2264
        CDS_position: ?-2264
        Protein_position: ?-755
        Exon_number: 1/1
  Isolation: Mutagen: EMS
  Description: Phenotype: WBPhenotype:0000102 Paper_evidence: WBPaper00053377
        Curator_confirmed: WBPerson39938
        Phenotype_assay: Genotype: olaIs1 [tph-1p::mCherry; tph-1p::cat-1::gfp] Paper_evidence: WBPaper00053377
              Curator_confirmed: WBPerson39938
    Phenotype_not_observed: WBPhenotype:0000643 Paper_evidence: WBPaper00053377
        Curator_confirmed: WBPerson39938
  Reference: WBPaper00053377
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele