WormBase Tree Display for Variation: WBVar00093445
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WBVar00093445 | Name | Public_name | ok2285 | ||
---|---|---|---|---|---|
Other_name | F45E4.3e.1:c.-27-119_2264delinsATCA | ||||
F45E4.3c.1:c.4207-119_6497delinsATCA | |||||
F45E4.3a.1:c.23047-119_25337delinsATCA | |||||
F45E4.3b.1:c.23047-119_25337delinsATCA | |||||
F45E4.3d.1:c.4207-119_6497delinsATCA | |||||
HGVSg | CHROMOSOME_IV:g.7620896_7623305delinsATCA | ||||
Sequence_details | SMap | S_parent | Sequence | F45E4 | |
Flanking_sequences | tttgagatatcaaacgatcggaaactagta | ccgacagtatggagccgcaccacctccaac | |||
Mapping_target | F45E4 | ||||
Type_of_mutation | Insertion | ATCA | |||
Deletion | |||||
PCR_product | ok2285_external | ||||
ok2285_internal | |||||
SeqStatus | Sequenced | ||||
Variation_type | Allele | ||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00032468 | ||||
Laboratory | RB | ||||
Person | WBPerson46 | ||||
KO_consortium_allele | |||||
Status | Live | ||||
Affects | Gene | WBGene00018468 | |||
Transcript | F45E4.3c.1 | VEP_consequence | splice_acceptor_variant,coding_sequence_variant,intron_variant | ||
VEP_impact | HIGH | ||||
HGVSc | F45E4.3c.1:c.4207-119_6497delinsATCA | ||||
cDNA_position | ?-6497 | ||||
CDS_position | ?-6497 | ||||
Protein_position | ?-2166 | ||||
Intron_number | 17/17 | ||||
Exon_number | 18/18 | ||||
F45E4.3d.1 | VEP_consequence | splice_acceptor_variant,coding_sequence_variant,intron_variant | |||
VEP_impact | HIGH | ||||
HGVSc | F45E4.3d.1:c.4207-119_6497delinsATCA | ||||
cDNA_position | ?-6497 | ||||
CDS_position | ?-6497 | ||||
Protein_position | ?-2166 | ||||
Intron_number | 17/24 | ||||
Exon_number | 18/25 | ||||
F45E4.3e.1 | VEP_consequence | splice_acceptor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
VEP_impact | HIGH | ||||
HGVSc | F45E4.3e.1:c.-27-119_2264delinsATCA | ||||
cDNA_position | ?-2339 | ||||
CDS_position | ?-2264 | ||||
Protein_position | ?-755 | ||||
Intron_number | 1/10 | ||||
Exon_number | 2-3/11 | ||||
F45E4.3b.1 | VEP_consequence | splice_acceptor_variant,coding_sequence_variant,intron_variant | |||
VEP_impact | HIGH | ||||
HGVSc | F45E4.3b.1:c.23047-119_25337delinsATCA | ||||
cDNA_position | ?-25337 | ||||
CDS_position | ?-25337 | ||||
Protein_position | ?-8446 | ||||
Intron_number | 32/32 | ||||
Exon_number | 33/33 | ||||
F45E4.3a.1 | VEP_consequence | splice_acceptor_variant,coding_sequence_variant,intron_variant | |||
VEP_impact | HIGH | ||||
HGVSc | F45E4.3a.1:c.23047-119_25337delinsATCA | ||||
cDNA_position | ?-25337 | ||||
CDS_position | ?-25337 | ||||
Protein_position | ?-8446 | ||||
Intron_number | 32/40 | ||||
Exon_number | 33/41 | ||||
F45E4.3f.1 | VEP_consequence | coding_sequence_variant,5_prime_UTR_variant | |||
VEP_impact | MODIFIER | ||||
cDNA_position | ?-2264 | ||||
CDS_position | ?-2264 | ||||
Protein_position | ?-755 | ||||
Exon_number | 1/1 | ||||
Isolation | Mutagen | EMS | |||
Description (2) | |||||
Reference | WBPaper00053377 | ||||
Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
Method | KO_consortium_allele |