WormBase Tree Display for Variation: WBVar00093190
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| WBVar00093190 | Name | Public_name | ok1997 | ||
|---|---|---|---|---|---|
| Other_name | Y57G11C.20.1:c.548_1564del | ||||
| Y57G11C.22a.1:c.101-3633_101-2617del | |||||
| CE14964:p.Lys183_Ser521del | |||||
| HGVSg | CHROMOSOME_IV:g.14843909_14844925del | ||||
| Sequence_details | SMap | S_parent | Sequence | Y57G11C | |
| Flanking_sequences | ttcagactgataaagacgaacagcgtgaga | ttgattttttagattcaaacattttatttg | |||
| Mapping_target | Y57G11C | ||||
| Type_of_mutation | Deletion | ||||
| PCR_product | OK1997_external | ||||
| OK1997_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00032318 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00013315 | |||
| WBGene00013317 | |||||
| Transcript | Y57G11C.20.1 | VEP_consequence | inframe_deletion | ||
| VEP_impact | MODERATE | ||||
| HGVSc | Y57G11C.20.1:c.548_1564del | ||||
| HGVSp | CE14964:p.Lys183_Ser521del | ||||
| cDNA_position | 548-1564 | ||||
| CDS_position | 548-1564 | ||||
| Protein_position | 183-522 | ||||
| Exon_number | 1/1 | ||||
| Codon_change | aAGCATCTAGACACTCATAAAAAGGCTGAACAGAATGCGCAAGACAATCAAAAATACCATGATGAAGAACGGAAAAAACACATTGAGACACAAAAAAAGGCGGAGGAAAATGAAGAGAAACGTCGTGCTAAAGAAAAAGCCGATCGGGATGCTCACGTAGCACGGCATAAGCAAGCTGAAGCATTGGAAAAGAAAAAACGTGAACAAGAGGAAAAACAGAAAAACGAGGATCGTGAACGTGCCACGCAAAAAGAGCGCCGTGAACACATTGAACGACATCGACAAGCTGAGGCAAGAGCTAAAGCTTTGGAAAAGGAAAAACATGAACAAGAGGAAAAGCAGAAGAAGGAAAATCTCGAACGTGCCGAAAAAGAACGCCACGATCACATTGAACGTCAACGGCAAGCTGAGGCAAGAGCTAAAGCTTTGGAACAGGAAAAACAAGAGGAAAAACAGAAAAACGAGGATCGCGAGCGTGCCACGCAAAAAGAGCGCCGTGAACACCTTGAACGACACAGACAAGCTGAGGCAAGAGCTAAAGCTTTGGAAAAGGAAAAACACGAACGTTTACAACAGGAAGCTAAAGACAAAGAAGATGAAAGAGCCAGGGATAAAGCAAGAAAAGATGCAAAGGCTAGAGAAGAGGCTAAATCAAGAGAAGATGTAAAAGCTGAAAAAGTTGCGATTGATCCGAAACAGGTTGTCAACATACCTGGAAAGGTTTACGCTAGTCAGGAGGCTAAAAAAATTATCGAAAAGGTAAACGAGCTTGAAAAACAGGAAAGGGACAAGATTGTGTCAAAAGTTAGGGAATCGGAAGCAATTGAAAAGGAAGCAGTTCGAGCATCTTCAGAGTACCATGATGTTGCTTTGAAAATTTTTCAAAAACCCAATGATAGAAACATTTATGATGAATTGAAACTATCCTTTGAGCGAATCCGATCAAGGATAAAAGTTTCGCACTTTGAAAACTCTTCAGACTATCTGCAATTTGGAGAAAAGGACGGAAGAGTTTCCAtt/att | ||||
| Amino_acid_change | KHLDTHKKAEQNAQDNQKYHDEERKKHIETQKKAEENEEKRRAKEKADRDAHVARHKQAEALEKKKREQEEKQKNEDRERATQKERREHIERHRQAEARAKALEKEKHEQEEKQKKENLERAEKERHDHIERQRQAEARAKALEQEKQEEKQKNEDRERATQKERREHLERHRQAEARAKALEKEKHERLQQEAKDKEDERARDKARKDAKAREEAKSREDVKAEKVAIDPKQVVNIPGKVYASQEAKKIIEKVNELEKQERDKIVSKVRESEAIEKEAVRASSEYHDVALKIFQKPNDRNIYDELKLSFERIRSRIKVSHFENSSDYLQFGEKDGRVSI/I | ||||
| Y57G11C.22a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y57G11C.22a.1:c.101-3633_101-2617del | ||||
| Intron_number | 2/7 | ||||
| Isolation | Mutagen | EMS | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
