WormBase Tree Display for Variation: WBVar00092148

WBVar00092148 Evidence: Paper_evidence: WBPaper00033444
  Name: Public_name: ok873
    Other_name: W02A2.1a.1:c.652-92_*52delinsGT
    HGVSg: CHROMOSOME_IV:g.13325107_13326330delinsGT
  Sequence_details: SMap: S_parent: Sequence: W02A2
    Flanking_sequences: tttgaattatataaagagctcccaaaaact taaccaattttgaatttgtttttgaaaatt
    Mapping_target: W02A2
    Type_of_mutation: Insertion: GT
      Deletion
    PCR_product: ok873_external
      ok873_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00031679
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00001394
    Transcript: W02A2.1a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: W02A2.1a.1:c.652-92_*52delinsGT
        cDNA_position: ?-1190
        Intron_number: 2-3/4
        Exon_number: 3-5/5
      W02A2.1b.1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
    Interactor: WBInteraction000009142
  Isolation: Mutagen: UV/TMP
  Description: Phenotype: WBPhenotype:0000519 Paper_evidence: WBPaper00033444
        Curator_confirmed: WBPerson2021
        Remark: Mutant strains tested showed altered fitness compared to wild type when exposed to different bacterial environments such as E. coli, M. luteus, and Pseudomonas sp.and B. megaterium Paper_evidence: WBPaper00033444
            Curator_confirmed: WBPerson2021
        Variation_effect: Null: Paper_evidence: WBPaper00033444
            Curator_confirmed: WBPerson2021
  Reference: WBPaper00033444
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele