WormBase Tree Display for Gene: WBGene00001394
expand all nodes | collapse all nodes | view schema
| WBGene00001394 | SMap | S_parent | Sequence | W02A2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | fat-2 | |||||||
| Sequence_name | W02A2.1 | ||||||||
| Molecular_name | W02A2.1a | ||||||||
| W02A2.1a.1 | |||||||||
| CE21231 | |||||||||
| W02A2.1b | |||||||||
| CE49971 | |||||||||
| W02A2.1b.1 | |||||||||
| Other_name | CELE_W02A2.1 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | fat-2 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:24 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | fat | ||||||||
| Allele (35) | |||||||||
| Strain | WBStrain00031679 | ||||||||
| WBStrain00004011 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (22) | |||||||||
| Ortholog (32) | |||||||||
| Paralog | WBGene00001393 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | fat-2 encodes a delta-12 fatty acyl desaturase that increases membranefluidity when expressed in yeast, and that may protect against coldstress; FAT-2's substrate is unknown, but may be acyl-CoA; FAT-2 isrequired in vivo for normal levels of C18 or C20 polyunsaturated fattyacids (PUFAs); FAT-2 is fully required for a sperm-attracting cue(perhaps an eicosanoid) secreted by oocytes, and partially required forthe polarizing activity of PAR-3, PAR-6, and other proteins; FAT-2 isalso required for a normally fast growth rate and movement rate, and fornormal body shape, defecation rhythm, and brood size; when expressed in yeast, FAT-2 exhibits a v+3 mode of desaturase activity, catalyzing double bond formation three carbons from an existing double bond. | Paper_evidence | WBPaper00003999 | |||||
| WBPaper00005233 | |||||||||
| WBPaper00005728 | |||||||||
| WBPaper00013538 | |||||||||
| WBPaper00013550 | |||||||||
| WBPaper00024509 | |||||||||
| WBPaper00027724 | |||||||||
| WBPaper00028527 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 10 Jun 2010 00:00:00 | ||||||||
| Automated_description | Enables stearoyl-CoA 9-desaturase activity. Involved in several processes, including collagen and cuticulin-based cuticle development; fatty acid biosynthetic process; and innate immune response. Predicted to be located in membrane. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | W02A2.1a | |||||||
| W02A2.1b | |||||||||
| Corresponding_transcript | W02A2.1a.1 | ||||||||
| W02A2.1b.1 | |||||||||
| Other_sequence (153) | |||||||||
| Associated_feature | WBsf660885 | ||||||||
| WBsf979037 | |||||||||
| WBsf998380 | |||||||||
| WBsf998381 | |||||||||
| WBsf1018513 | |||||||||
| WBsf229419 | |||||||||
| Experimental_info | RNAi_result (19) | ||||||||
| Expr_pattern | Chronogram1822 | ||||||||
| Expr6815 | |||||||||
| Expr1021921 | |||||||||
| Expr1030834 | |||||||||
| Expr1158089 | |||||||||
| Expr2011435 | |||||||||
| Expr2029673 | |||||||||
| Drives_construct | WBCnstr00003419 | ||||||||
| WBCnstr00036975 | |||||||||
| Construct_product | WBCnstr00036975 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (258) | |||||||||
| Interaction (211) | |||||||||
| WBProcess | WBbiopr:00000121 | ||||||||
| Map_info | Map | IV | Position | 8.52821 | Error | 0.001854 | |||
| Positive | Positive_clone | W02A2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4297 | |||||||
| 4298 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (56) | |||||||||
| Remark | M03A8.1 link removed by agreement. [sdm 0107] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
