WormBase Tree Display for Variation: WBVar00091656

WBVar00091656 Name: Public_name: ok359
    HGVSg: CHROMOSOME_I:g.1339818_1341314del
  Sequence_details: SMap: S_parent: Sequence: K12C11
    Flanking_sequences: gcgcttgcaatttcacgatgagacctgacg tagtaggaatgatgataaattagaatcagt
    Mapping_target: K12C11
    Type_of_mutation: Deletion
    PCR_product: OK359_external
      OK359_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00035570
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00004888
      WBGene00019673
    Transcript: K12C11.1a.1 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: 1538-?
        Exon_number: 4/4
      K12C11.2.1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 2-3/4
        Exon_number: 1-5/5
    Interactor: WBInteraction000501549
      WBInteraction000503839
      WBInteraction000504202
      WBInteraction000520941
  Genetics: Mapping_data: In_multi_point: 4668
  Description: Phenotype (11)
    Phenotype_not_observed: WBPhenotype:0000475 Paper_evidence: WBPaper00035491
        Curator_confirmed: WBPerson2021
        Remark: No muscle detachment (Mua) phenotype in smo- 1(ok359) worms Paper_evidence: WBPaper00035491
            Curator_confirmed: WBPerson2021
        Variation_effect: Null: Paper_evidence: WBPaper00035491
            Curator_confirmed: WBPerson2021
      WBPhenotype:0001813 Paper_evidence: WBPaper00032296
        Curator_confirmed: WBPerson712
        Remark: Synapsis occurs normally, as assayed by staining with antibodies against HTP-3 and SYP-1. Paper_evidence: WBPaper00032296
            Curator_confirmed: WBPerson712
        Phenotype_assay: Genotype: Ppie-1::zhp-3::gfp Paper_evidence: WBPaper00032296
              Curator_confirmed: WBPerson712
  Reference: WBPaper00032296
    WBPaper00035491
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele