WormBase Tree Display for Variation: WBVar00091608
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| WBVar00091608 | Evidence | Paper_evidence | WBPaper00006213 | ||||
|---|---|---|---|---|---|---|---|
| Name | Public_name | ok310 | |||||
| Other_name | T04D1.3a.1:c.619-3_856-161del | ||||||
| T04D1.3c.1:c.619-3_862-161del | |||||||
| T04D1.3d.1:c.619-3_862-155del | |||||||
| HGVSg | CHROMOSOME_I:g.4676456_4678413del | ||||||
| Sequence_details | SMap | S_parent | Sequence | T04D1 | |||
| Flanking_sequences | ttttagatataatcacaaaaaaattctttt | gaattttttaaatcaattttctaaatcgaa | |||||
| Mapping_target | T04D1 | ||||||
| Type_of_mutation | Deletion | ||||||
| PCR_product | ok310_external | ||||||
| ok310_internal | |||||||
| SeqStatus | Sequenced | ||||||
| Variation_type | Allele | ||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00006676 | ||||||
| Laboratory | RB | ||||||
| Person | WBPerson46 | ||||||
| KO_consortium_allele | |||||||
| Status | Live | ||||||
| Affects | Gene | WBGene00006791 | |||||
| Transcript | T04D1.3b.1 | VEP_consequence | splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | ||||
| VEP_impact | HIGH | ||||||
| Intron_number | 1/1 | ||||||
| Exon_number | 1/2 | ||||||
| T04D1.3d.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | T04D1.3d.1:c.619-3_862-155del | ||||||
| Intron_number | 4-6/7 | ||||||
| Exon_number | 5-6/8 | ||||||
| T04D1.3c.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | T04D1.3c.1:c.619-3_862-161del | ||||||
| Intron_number | 4-6/7 | ||||||
| Exon_number | 5-6/8 | ||||||
| T04D1.3a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | T04D1.3a.1:c.619-3_856-161del | ||||||
| Intron_number | 4-6/7 | ||||||
| Exon_number | 5-6/8 | ||||||
| Interactor | WBInteraction000500596 | ||||||
| WBInteraction000500608 | |||||||
| WBInteraction000500614 | |||||||
| WBInteraction000501470 | |||||||
| WBInteraction000503418 | |||||||
| Isolation | Mutagen | TMP/UV | |||||
| Description | Phenotype_not_observed | WBPhenotype:0000436 | Paper_evidence | WBPaper00028886 | |||
| Curator_confirmed | WBPerson48 | ||||||
| Remark | Localization of synaptic protein SNB-1 is normal, based on expression analysis of SNB-1::VENUS. | Paper_evidence | WBPaper00028886 | ||||
| Curator_confirmed | WBPerson48 | ||||||
| Reference | WBPaper00028886 | ||||||
| WBPaper00016792 | |||||||
| WBPaper00019385 | |||||||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||||
| Method | KO_consortium_allele |
