WormBase Tree Display for Variation: WBVar00091217

WBVar00091217 Evidence: Paper_evidence: WBPaper00029073
  Name: Public_name: WBVar00091217
    Other_name: niDf196(IV)
    HGVSg: CHROMOSOME_IV:g.4594965_4601017del
  Sequence_details: SMap: S_parent: Sequence: F19C7
    Flanking_sequences: CACGCCAAAATTAAAATATGAACTCGGGCT TTCAAGTGGGTTTTTTTTCCAAATAATTTA
    Mapping_target: F19C7
    CGH_deleted_probes: TCTCTTACAAAAGAAATCAAGGCAACGGTTTCGACCTTCACGTGAAACGT TTACCAAAGCATATAGTGGACCGGATAGTCGAGCACTGCTCAAGCAACGA
    Type_of_mutation: Deletion
    SeqStatus: Sequenced
  Variation_type: Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00022850
    Laboratory: VC
    Person: WBPerson427
    Detection_method: Oligo Array CGH
    Status: Live
  Affects: Gene: WBGene00017592
      WBGene00044302
      WBGene00017593
      WBGene00305361
    Transcript: F19C7.9
      F19C7.2.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-793
        CDS_position: ?-792
        Protein_position: ?-264
        Intron_number: 2/9
        Exon_number: 1-3/10
      F19C7.3.1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 2-6/7
        Exon_number: 1-8/8
    Pseudogene: F28E10.5 VEP_consequence: splice_acceptor_variant,splice_donor_variant,non_coding_transcript_exon_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: 683-?
        Intron_number: 2-7/7
        Exon_number: 2-8/8
  Reference: WBPaper00029073
  Remark: Flanking sequences represent the nearest array oligo sequences present in the deletion chromsome on the basis of fluorescence ratio. These should not be considered hard breakpoints in the absence of actual sequence data. Original data available on-line at http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE6294.
  Method: CGH_allele