WormBase Tree Display for Variation: WBVar00088448
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| WBVar00088448 | Evidence | Paper_evidence | WBPaper00004669 | ||
|---|---|---|---|---|---|
| Name | Public_name | ky400 | |||
| Other_name | F59A6.1b.1:c.1582A>T | ||||
| CE50862:p.Lys528Ter | |||||
| CE44901:p.Lys542Ter | |||||
| F59A6.1a.1:c.1624A>T | |||||
| HGVSg | CHROMOSOME_II:g.5026025A>T | ||||
| Sequence_details | SMap | S_parent | Sequence | F33G12 | |
| Flanking_sequences | agatacccagtacttattctggaactcaat | aggaattcacaccttcttatctgactctga | |||
| Mapping_target | F33G12 | ||||
| Type_of_mutation | Substitution | a | t | ||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Laboratory | CX | ||||
| Status | Live | ||||
| Affects | Gene | WBGene00003822 | |||
| Transcript | F59A6.1a.1 | VEP_consequence | stop_gained | ||
| VEP_impact | HIGH | ||||
| HGVSc | F59A6.1a.1:c.1624A>T | ||||
| HGVSp | CE44901:p.Lys542Ter | ||||
| cDNA_position | 1781 | ||||
| CDS_position | 1624 | ||||
| Protein_position | 542 | ||||
| Exon_number | 7/12 | ||||
| Codon_change | Aag/Tag | ||||
| Amino_acid_change | K/* | ||||
| F59A6.1b.1 | VEP_consequence | stop_gained | |||
| VEP_impact | HIGH | ||||
| HGVSc | F59A6.1b.1:c.1582A>T | ||||
| HGVSp | CE50862:p.Lys528Ter | ||||
| cDNA_position | 1582 | ||||
| CDS_position | 1582 | ||||
| Protein_position | 528 | ||||
| Exon_number | 6/11 | ||||
| Codon_change | Aag/Tag | ||||
| Amino_acid_change | K/* | ||||
| Interactor | WBInteraction000501729 | ||||
| WBInteraction000504796 | |||||
| WBInteraction000517982 | |||||
| WBInteraction000517983 | |||||
| Genetics | Interpolated_map_position | II | -2.59273 | ||
| Description (2) | |||||
| Reference | WBPaper00037959 | ||||
| WBPaper00003760 | |||||
| WBPaper00004669 | |||||
| Method | Substitution_allele |
