WormBase Tree Display for Variation: WBVar00088296
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| WBVar00088296 | Evidence | Paper_evidence | WBPaper00002286 | ||||
|---|---|---|---|---|---|---|---|
| Name | Public_name | ku3 | |||||
| Other_name | CE28024:p.Arg1235Ter | ||||||
| F39B2.4b.1:c.3703C>T | |||||||
| CE28023:p.Arg1233Ter | |||||||
| F39B2.4a.1:c.3697C>T | |||||||
| HGVSg | CHROMOSOME_I:g.14779909G>A | ||||||
| Sequence_details | SMap | S_parent | Sequence | F39B2 | |||
| Flanking_sequences | gaggagagcctattgttgaatttgcccaat | gagcacgtacaattaatgtgatatcgcaac | |||||
| Mapping_target | F39B2 | ||||||
| Type_of_mutation | Substitution | c | t | Paper_evidence | WBPaper00002286 | ||
| SeqStatus | Sequenced | ||||||
| Variation_type | Allele | ||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Laboratory | MH | ||||||
| Status | Live | ||||||
| Affects | Gene | WBGene00006349 | |||||
| Transcript | F39B2.4b.1 | VEP_consequence | stop_gained | ||||
| VEP_impact | HIGH | ||||||
| HGVSc | F39B2.4b.1:c.3703C>T | ||||||
| HGVSp | CE28024:p.Arg1235Ter | ||||||
| cDNA_position | 3710 | ||||||
| CDS_position | 3703 | ||||||
| Protein_position | 1235 | ||||||
| Exon_number | 15/19 | ||||||
| Codon_change | Cga/Tga | ||||||
| Amino_acid_change | R/* | ||||||
| F39B2.4a.1 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | F39B2.4a.1:c.3697C>T | ||||||
| HGVSp | CE28023:p.Arg1233Ter | ||||||
| cDNA_position | 3705 | ||||||
| CDS_position | 3697 | ||||||
| Protein_position | 1233 | ||||||
| Exon_number | 15/19 | ||||||
| Codon_change | Cga/Tga | ||||||
| Amino_acid_change | R/* | ||||||
| Genetics | Interpolated_map_position | I | 26.8177 | ||||
| Reference | WBPaper00002286 | ||||||
| Method | Substitution_allele |
