WormBase Tree Display for Variation: WBVar00088243
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| WBVar00088243 | Name | Public_name | km11 | ||
|---|---|---|---|---|---|
| Other_name | C18C4.10b.3:c.581_1465-81del | ||||
| C18C4.10b.1:c.581_1465-81del | |||||
| C18C4.10a.1:c.644_1527+546del | |||||
| C18C4.10c.1:c.581_1464+546del | |||||
| C18C4.10b.2:c.581_1465-81del | |||||
| HGVSg | CHROMOSOME_V:g.5577342_5578821del | ||||
| Sequence_details | SMap | S_parent | Sequence | C18C4 | |
| Flanking_sequences | agcacatcactatcactaaaatacaaaaat | ccgccatttggttggctggtgttggttggt | |||
| Mapping_target | C18C4 | ||||
| Type_of_mutation | Deletion | ||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00050735 | ||||
| WBStrain00057251 | |||||
| Laboratory | KU | ||||
| MTS | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00002215 | |||
| Transcript | C18C4.10b.2 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | C18C4.10b.2:c.581_1465-81del | ||||
| cDNA_position | 715-? | ||||
| CDS_position | 581-? | ||||
| Protein_position | 194-? | ||||
| Intron_number | 5-6/7 | ||||
| Exon_number | 5-6/8 | ||||
| C18C4.10a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | C18C4.10a.1:c.644_1527+546del | ||||
| cDNA_position | 706-? | ||||
| CDS_position | 644-? | ||||
| Protein_position | 215-? | ||||
| Intron_number | 5-6/7 | ||||
| Exon_number | 5-6/8 | ||||
| C18C4.10b.3 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | C18C4.10b.3:c.581_1465-81del | ||||
| cDNA_position | 589-? | ||||
| CDS_position | 581-? | ||||
| Protein_position | 194-? | ||||
| Intron_number | 4-5/6 | ||||
| Exon_number | 4-5/7 | ||||
| C18C4.10b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | C18C4.10b.1:c.581_1465-81del | ||||
| cDNA_position | 606-? | ||||
| CDS_position | 581-? | ||||
| Protein_position | 194-? | ||||
| Intron_number | 4-5/6 | ||||
| Exon_number | 4-5/7 | ||||
| C18C4.10c.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | C18C4.10c.1:c.581_1464+546del | ||||
| cDNA_position | 612-? | ||||
| CDS_position | 581-? | ||||
| Protein_position | 194-? | ||||
| Intron_number | 4-5/6 | ||||
| Exon_number | 4-5/7 | ||||
| Interactor | WBInteraction000502016 | ||||
| WBInteraction000502017 | |||||
| WBInteraction000542015 | |||||
| WBInteraction000542016 | |||||
| WBInteraction000542017 | |||||
| WBInteraction000542018 | |||||
| WBInteraction000542019 | |||||
| Genetics | Interpolated_map_position | V | -1.48706 | ||
| Mapping_data | In_multi_point | 4462 | |||
| Reference | WBPaper00010139 | ||||
| WBPaper00018908 | |||||
| WBPaper00011978 | |||||
| WBPaper00018039 | |||||
| WBPaper00066048 | |||||
| Method | Deletion_allele |
