WormBase Tree Display for Variation: WBVar00080358
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WBVar00080358 | Evidence | Paper_evidence | WBPaper00040707 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00080358 | |||
Other_name | haw104718 | ||||
cewivar00274400 | |||||
T10A3.1e.1:c.3599-18A>G | |||||
T10A3.1c.1:c.3914-18A>G | |||||
T10A3.1b.1:c.3953-18A>G | |||||
T10A3.1f.1:c.3593-18A>G | |||||
T10A3.1d.1:c.3908-18A>G | |||||
T10A3.1a.1:c.4001-18A>G | |||||
HGVSg | CHROMOSOME_X:g.7273393T>C | ||||
Sequence_details | SMap | S_parent | Sequence | T10A3 | |
Flanking_sequences | tttcccttctgtaaaatatgattga | aaatttacataacatgtcatgctta | |||
Mapping_target | T10A3 | ||||
Type_of_mutation | Substitution | T | C | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | WGS_Hawaiian_Waterston | ||
Million_mutation_project_reanalysis | |||||
WGS_Andersen | |||||
WBStrain00005835 | From_analysis | WGS_Andersen | |||
Laboratory | RW | ||||
QX | |||||
Person | WBPerson1562 | ||||
WBPerson1730 | |||||
Analysis | WGS_Hawaiian_Waterston | ||||
Million_mutation_project_reanalysis | |||||
WGS_Andersen | |||||
History | Acquires_merge | WBVar01469676 | |||
Status | Live | ||||
Affects | Gene | WBGene00006750 | |||
Transcript | T10A3.1c.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | T10A3.1c.1:c.3914-18A>G | ||||
Intron_number | 24/28 | ||||
T10A3.1d.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | T10A3.1d.1:c.3908-18A>G | ||||
Intron_number | 24/27 | ||||
T10A3.1e.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | T10A3.1e.1:c.3599-18A>G | ||||
Intron_number | 23/27 | ||||
T10A3.1b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | T10A3.1b.1:c.3953-18A>G | ||||
Intron_number | 23/27 | ||||
T10A3.1a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | T10A3.1a.1:c.4001-18A>G | ||||
Intron_number | 23/27 | ||||
T10A3.1f.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | T10A3.1f.1:c.3593-18A>G | ||||
Intron_number | 23/26 | ||||
Reference | WBPaper00040707 | ||||
Remark | [20081124 db] this Variation was previously named hw104718 | ||||
Method | WGS_Hawaiian_Waterston |