WormBase Tree Display for Variation: WBVar00079167
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| WBVar00079167 | Name | Public_name | WBVar00079167 | ||
|---|---|---|---|---|---|
| Other_name (11) | |||||
| HGVSg | CHROMOSOME_X:g.5535733A>T | ||||
| Sequence_details | SMap | S_parent | Sequence | C54G7 | |
| Flanking_sequences | ttgaattggaggctgaaaatttgtt | tatagggaaatacaaagaaaacact | |||
| Mapping_target | C54G7 | ||||
| Type_of_mutation | Substitution | A | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||
| WGS_Hawaiian_Waterston | |||||
| WBStrain00022850 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022852 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022856 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022878 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022886 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022902 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| Person | WBPerson1562 | ||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| Million_mutation_project_reanalysis | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00002983 | |||
| Transcript | C54G7.3i.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | C54G7.3i.1:c.1282-14T>A | ||||
| Intron_number | 8/29 | ||||
| C54G7.3c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C54G7.3c.1:c.1426-14T>A | ||||
| Intron_number | 9/30 | ||||
| C54G7.3h.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C54G7.3h.1:c.1273-14T>A | ||||
| Intron_number | 8/29 | ||||
| C54G7.3f.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C54G7.3f.1:c.1129-14T>A | ||||
| Intron_number | 7/28 | ||||
| C54G7.3d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C54G7.3d.1:c.1273-14T>A | ||||
| Intron_number | 8/29 | ||||
| C54G7.3e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C54G7.3e.1:c.1282-14T>A | ||||
| Intron_number | 8/29 | ||||
| C54G7.3a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C54G7.3a.1:c.1129-14T>A | ||||
| Intron_number | 8/30 | ||||
| C54G7.3b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C54G7.3b.1:c.1426-14T>A | ||||
| Intron_number | 10/21 | ||||
| C54G7.3g.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C54G7.3g.1:c.1426-14T>A | ||||
| Intron_number | 9/30 | ||||
| Remark | [20081124 db] this Variation was previously named hw103527 | ||||
| Method | WGS_Hawaiian_Waterston |
