WormBase Tree Display for Variation: WBVar00078342
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WBVar00078342 | Name | Public_name | WBVar00078342 | ||
---|---|---|---|---|---|
Other_name | haw102702 | ||||
cewivar00125659 | |||||
F39C12.3b.1:c.198+169G>A | |||||
F39C12.3a.1:c.126+169G>A | |||||
F39C12.3a.2:c.126+169G>A | |||||
F39C12.3a.3:c.126+169G>A | |||||
HGVSg | CHROMOSOME_X:g.4870728C>T | ||||
Sequence_details | SMap | S_parent | Sequence | F39C12 | |
Flanking_sequences | cacgaaacaggtgcatacaaaaatt | ttcttaaggtgtttgatgtctgtta | |||
Mapping_target | F39C12 | ||||
Type_of_mutation | Substitution | C | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | ||
WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | |||
WGS_Hawaiian_Waterston | |||||
WBStrain00022886 | From_analysis | Million_mutation_project_reanalysis | |||
Laboratory | RW | ||||
Person | WBPerson1562 | ||||
Analysis | WGS_Hawaiian_Waterston | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00006640 | |||
Transcript | F39C12.3a.3 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | F39C12.3a.3:c.126+169G>A | ||||
Intron_number | 3/10 | ||||
F39C12.3a.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F39C12.3a.2:c.126+169G>A | ||||
Intron_number | 2/9 | ||||
F39C12.3a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F39C12.3a.1:c.126+169G>A | ||||
Intron_number | 3/10 | ||||
F39C12.3b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F39C12.3b.1:c.198+169G>A | ||||
Intron_number | 3/9 | ||||
Remark | [20081124 db] this Variation was previously named hw102702 | ||||
Method | WGS_Hawaiian_Waterston |