WormBase Tree Display for Gene: WBGene00006640
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| WBGene00006640 | SMap | S_parent | Sequence | CHROMOSOME_X | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | tsp-14 | Person_evidence | WBPerson522 | |||||
| Sequence_name | F39C12.3 | ||||||||
| Molecular_name | F39C12.3a | ||||||||
| F39C12.3a.1 | |||||||||
| CE10096 | |||||||||
| F39C12.3b | |||||||||
| CE29315 | |||||||||
| F39C12.3a.2 | |||||||||
| F39C12.3a.3 | |||||||||
| F39C12.3b.1 | |||||||||
| Other_name | CELE_F39C12.3 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | tsp-14 | ||||||||
| DB_info | Database | AceView | gene | XF486 | |||||
| WormQTL | gene | WBGene00006640 | |||||||
| WormFlux | gene | WBGene00006640 | |||||||
| NDB | locus_tag | CELE_F39C12.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006640|UniProtKB=H2L006 | |||||||
| family | PTHR19282 | ||||||||
| NCBI | gene | 180761 | |||||||
| RefSeq | protein | NM_001392767.1 | |||||||
| NM_001380953.1 | |||||||||
| SwissProt | UniProtAcc | H2L006 | |||||||
| UniProt_GCRP | UniProtAcc | H2L006 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:41 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tsp | ||||||||
| Allele (229) | |||||||||
| Possibly_affected_by | WBVar02157784 | ||||||||
| WBVar02157785 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (23) | |||||||||
| Ortholog (35) | |||||||||
| Paralog (20) | |||||||||
| Structured_description | Automated_description | Enables protease binding activity. Involved in several processes, including nematode male tail tip morphogenesis; positive regulation of BMP signaling pathway; and regulation of developmental process. Predicted to be located in apical plasma membrane; basolateral plasma membrane; and endosome membrane. Expressed in several structures, including germ line; nose; sperm; vulva; and vulval precursor cell. Used to study cancer. Is an ortholog of human TSPAN10 (tetraspanin 10). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Experimental_model | DOID:162 | Homo sapiens | Paper_evidence | WBPaper00046810 | ||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 15 Jul 2015 00:00:00 | ||||||||
| Models_disease_in_annotation | WBDOannot00000357 | ||||||||
| Molecular_info | Corresponding_CDS | F39C12.3a | |||||||
| F39C12.3b | |||||||||
| Corresponding_transcript | F39C12.3a.1 | ||||||||
| F39C12.3a.2 | |||||||||
| F39C12.3a.3 | |||||||||
| F39C12.3b.1 | |||||||||
| Other_sequence (94) | |||||||||
| Associated_feature (23) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00014596 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00046767 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00031985 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (11) | |||||||||
| Drives_construct | WBCnstr00034247 | ||||||||
| Construct_product | WBCnstr00034247 | ||||||||
| Microarray_results (26) | |||||||||
| Expression_cluster (192) | |||||||||
| Interaction (75) | |||||||||
| Map_info | Map | X | Position | -6.21985 | Error | 0.001511 | |||
| Positive | Positive_clone | F39C12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (11) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
