WormBase Tree Display for Gene: WBGene00006640
expand all nodes | collapse all nodes | view schema
| WBGene00006640 | SMap | S_parent | Sequence | CHROMOSOME_X | |||
|---|---|---|---|---|---|---|---|
| Identity (6) | |||||||
| Gene_info | Biotype | SO:0001217 | |||||
| Gene_class | tsp | ||||||
| Allele (229) | |||||||
| Possibly_affected_by | WBVar02157784 | ||||||
| WBVar02157785 | |||||||
| RNASeq_FPKM (74) | |||||||
| GO_annotation (23) | |||||||
| Ortholog (35) | |||||||
| Paralog (20) | |||||||
| Structured_description | Automated_description | Enables protease binding activity. Involved in several processes, including nematode male tail tip morphogenesis; positive regulation of BMP signaling pathway; and regulation of developmental process. Predicted to be located in apical plasma membrane; basolateral plasma membrane; and endosome membrane. Expressed in several structures, including germ line; nose; sperm; vulva; and vulval precursor cell. Used to study cancer. Is an ortholog of human TSPAN10 (tetraspanin 10). | Paper_evidence | WBPaper00065943 | |||
| Curator_confirmed | WBPerson324 | ||||||
| WBPerson37462 | |||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
| Disease_info | Experimental_model | DOID:162 | Homo sapiens | Paper_evidence | WBPaper00046810 | ||
| Curator_confirmed | WBPerson324 | ||||||
| Date_last_updated | 15 Jul 2015 00:00:00 | ||||||
| Models_disease_in_annotation | WBDOannot00000357 | ||||||
| Molecular_info | Corresponding_CDS | F39C12.3a | |||||
| F39C12.3b | |||||||
| Corresponding_transcript | F39C12.3a.1 | ||||||
| F39C12.3a.2 | |||||||
| F39C12.3a.3 | |||||||
| F39C12.3b.1 | |||||||
| Other_sequence (94) | |||||||
| Associated_feature (23) | |||||||
| Experimental_info | RNAi_result | WBRNAi00014596 | Inferred_automatically | RNAi_primary | |||
| WBRNAi00046767 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00031985 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern (11) | |||||||
| Drives_construct | WBCnstr00034247 | ||||||
| Construct_product | WBCnstr00034247 | ||||||
| Microarray_results (26) | |||||||
| Expression_cluster (192) | |||||||
| Interaction (75) | |||||||
| Map_info | Map | X | Position | -6.21985 | Error | 0.001511 | |
| Positive | Positive_clone | F39C12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
| Pseudo_map_position | |||||||
| Reference (11) | |||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
| Method | Gene |
