WormBase Tree Display for Variation: WBVar00077458
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| WBVar00077458 | Evidence | Paper_evidence | WBPaper00004703 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00077458 | |||
| Other_name | snp_T06F4[9] | ||||
| haw101818 | |||||
| cewivar00272229 | |||||
| CE38544:p.Ile634= | |||||
| T06F4.2a.1:c.1902T>C | |||||
| T06F4.2b.1:c.1902T>C | |||||
| CE28648:p.Ile634= | |||||
| HGVSg | CHROMOSOME_X:g.4097194A>G | ||||
| Sequence_details | SMap | S_parent | Sequence | T06F4 | |
| Flanking_sequences | tgataaatttcaccggtgttaccat | atatgttcagcataagtggtatgaa | |||
| Mapping_target | T06F4 | ||||
| Type_of_mutation | Substitution | A | G | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
| WGS_Hawaiian_Waterston | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00022850 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022878 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022886 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| Person | WBPerson1562 | ||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| Million_mutation_project_reanalysis | |||||
| SNP_Wicks | |||||
| History | Acquires_merge | WBVar00246125 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00000531 | |||
| Transcript | T06F4.2b.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | T06F4.2b.1:c.1902T>C | ||||
| HGVSp | CE28648:p.Ile634= | ||||
| cDNA_position | 1902 | ||||
| CDS_position | 1902 | ||||
| Protein_position | 634 | ||||
| Exon_number | 12/21 | ||||
| Codon_change | atT/atC | ||||
| Amino_acid_change | I | ||||
| T06F4.2a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | T06F4.2a.1:c.1902T>C | ||||
| HGVSp | CE38544:p.Ile634= | ||||
| cDNA_position | 1939 | ||||
| CDS_position | 1902 | ||||
| Protein_position | 634 | ||||
| Exon_number | 13/20 | ||||
| Codon_change | atT/atC | ||||
| Amino_acid_change | I | ||||
| Reference | WBPaper00004703 | ||||
| Remark | [20081124 db] this Variation was previously named hw101818 | ||||
| Method | WGS_Hawaiian_Waterston |
