WormBase Tree Display for Variation: WBVar00056121
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| WBVar00056121 | Name | Public_name | WBVar00056121 | ||
|---|---|---|---|---|---|
| Other_name | pas22821 | ||||
| snp_Y54H5A[1] | |||||
| haw43109 | |||||
| haw143343 | |||||
| cewivar00106530 | |||||
| Y54H5A.4.1:c.612A>C | |||||
| CE29883:p.Ile204= | |||||
| HGVSg | CHROMOSOME_III:g.5157458T>G | ||||
| Sequence_details | SMap | S_parent | Sequence | Y54H5A | |
| Flanking_sequences | ccacagaaattgttatttcttttcaaatttacctttagaaagagccgataaccattgctcttcttctgatctattttcaacatctccggcttcgtcgttttccaatttgataatttcttctaacagttcagcagtacttataacacaatcagtctctcgaacatcagttccatcaactttaaattgttctctcgatgcctctaatttcttatcaaaacatggcattacagctgcatggaatacatcacaggggcttaaaccttctctttttgctagaaatcctttgataattgcaccact | atagcttgaggtgatcgaattttactgattttagggattaaaagctctccgtgacttttttcagcgtagcacacaaatcccggacaagcagatgaaagaagtggtcgagatgttgatggagttgttgaaagttcttcatatattaaagaatgtgcaaatttccgggcaaatgatgaatcaattacgtatttgacacctagtcttcggaaaaatgaggcaattattttcgctacttcatttgttgattttccaattttcacagcaatagaagtgatggcttgtggagaaacagtgacgact | |||
| Mapping_target | Y54H5A | ||||
| Type_of_mutation | Substitution | T | G | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (14) | |||||
| Laboratory | RW | ||||
| Person | WBPerson6900 | ||||
| WBPerson4037 | |||||
| WBPerson1562 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| SNP_Wicks | |||||
| WGS_Hawaiian_Waterston | |||||
| History | Acquires_merge | WBVar00563208 | |||
| WBVar00059936 | |||||
| WBVar00247676 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00021902 | |||
| Transcript | Y54H5A.4.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | Y54H5A.4.1:c.612A>C | ||||
| HGVSp | CE29883:p.Ile204= | ||||
| cDNA_position | 619 | ||||
| CDS_position | 612 | ||||
| Protein_position | 204 | ||||
| Exon_number | 3/6 | ||||
| Codon_change | atA/atC | ||||
| Amino_acid_change | I | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00004703 | |||||
| Method | WGS_Pasadena_Quinlan |
