WormBase Tree Display for Variation: WBVar00054086
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| WBVar00054086 | Evidence | Paper_evidence | WBPaper00004703 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00054086 | |||
| Other_name | pas22414 | ||||
| snp_F41D9[5] | |||||
| haw105602 | |||||
| cewivar00059453 | |||||
| F41D9.3b.1:c.338-378T>A | |||||
| F41D9.3f.1:c.338-378T>A | |||||
| F41D9.3c.1:c.338-378T>A | |||||
| F41D9.3e.1:c.338-354T>A | |||||
| F41D9.3a.1:c.338-378T>A | |||||
| HGVSg | CHROMOSOME_X:g.8391711A>T | ||||
| Sequence_details | SMap | S_parent | Sequence | F41D9 | |
| Flanking_sequences | ctacatcaaaaacaattttcaatgtgcaacattagacaaatttttattgactcaggtaaaaataagaagaaacaaacggttcctacaaaaaatattagtctatatggaaaatctctatgtacacgtaattcttacttcaagctctgaaatggacttaaaataaatattacataatttaggtagcgcaactcgtatttttcaagaaaaaatgcgctatctcaaacgaagtttttttctgaaacaatcaccttttaatttctataataactttacacgattaaccccttttggccatgttct | cttttaatttcattgcgcagatgtccatggcagtgatgggaccagtggaaaagcattatgtaatgacaaatgcctaataataagcgtggcggggagacggggggttaacagagatgggcgtttcagataagccattttgagtgcacattctttagaaaagttatgggtattgttggtttgattgttatttgttcaaattgttgtgtttgtattttttgtaaagagaaaaactgtaaattcaagtttgaaaaagttttctgtaacgtttacacattttttcacaaggttctctccacaact | |||
| Mapping_target | F41D9 | ||||
| Type_of_mutation | Substitution | A | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (28) | |||||
| Laboratory | RW | ||||
| Person | WBPerson6900 | ||||
| WBPerson1562 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| SNP_Wicks | |||||
| WGS_Hawaiian_Waterston | |||||
| History | Acquires_merge | WBVar00081242 | |||
| WBVar00244706 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00006942 | |||
| Transcript | F41D9.3f.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | F41D9.3f.1:c.338-378T>A | ||||
| Intron_number | 4/11 | ||||
| F41D9.3a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F41D9.3a.1:c.338-378T>A | ||||
| Intron_number | 4/10 | ||||
| F41D9.3e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F41D9.3e.1:c.338-354T>A | ||||
| Intron_number | 4/11 | ||||
| F41D9.3c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F41D9.3c.1:c.338-378T>A | ||||
| Intron_number | 3/8 | ||||
| F41D9.3b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F41D9.3b.1:c.338-378T>A | ||||
| Intron_number | 4/11 | ||||
| Reference | WBPaper00004703 | ||||
| Method | WGS_Pasadena_Quinlan |
