WormBase Tree Display for Variation: WBVar00053037
expand all nodes | collapse all nodes | view schema
| WBVar00053037 | Evidence | Paper_evidence | WBPaper00005369 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00053037 | |||
| Other_name | CE4-204 | ||||
| haw63264 | |||||
| cewivar00213625 | |||||
| Y57G11C.18:n.140A>T | |||||
| Y57G11C.22a.1:c.101-4392T>A | |||||
| HGVSg | CHROMOSOME_IV:g.14843150T>A | ||||
| Sequence_details | SMap | S_parent | Sequence | Y57G11C | |
| Flanking_sequences | gctcccgtgtagatatacataaaattgtttttgaacatgatcgaatgcaaagagttctgcatagtcataaaaccgtgtaaccgttttaccctgcacacggaaaagtctaccgttacagtgcattagcatatcgtccgaaccaataatttcaaatttgcatttgtcgttggcaacctgaacacgtagtccatcatcaattattgaatcttccattttataaaaccaccttaaatttggttcgccattctca | tgtatccgcaaaagtttacaaataaatttgtttcaaatggtaaatttgacaaatcaccatctaatagtctggagggaaccgtctttgtgaaaacagagacacttgatgctagtggtagtagaatcaaaatcaaaaacatttctggttgaaagcagtttttagttctttatatagctataaatagacaacaagtaacttgtgtgctctagtcatgaacgatttttatgtaactttaccgtcttccgtcaaa | |||
| Mapping_target | Y57G11C | ||||
| Type_of_mutation | Substitution | t | a | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Confirmed_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | SNP_Swan | ||
| WGS_Hawaiian_Waterston | |||||
| Million_mutation_project_reanalysis | |||||
| Laboratory | RW | ||||
| Person | WBPerson1562 | ||||
| Analysis | SNP_Swan | ||||
| Million_mutation_project_reanalysis | |||||
| WGS_Hawaiian_Waterston | |||||
| History | Acquires_merge | WBVar00195988 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00013317 | |||
| WBGene00013313 | |||||
| Transcript | Y57G11C.22a.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y57G11C.22a.1:c.101-4392T>A | ||||
| Intron_number | 2/7 | ||||
| Pseudogene | Y57G11C.18 | VEP_consequence | non_coding_transcript_exon_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y57G11C.18:n.140A>T | ||||
| cDNA_position | 140 | ||||
| Exon_number | 1/4 | ||||
| Reference | WBPaper00005369 | ||||
| Method | SNP_Swan |
