WormBase Tree Display for Variation: WBVar00052327
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| WBVar00052327 | Name | Public_name | WBVar00052327 | ||
|---|---|---|---|---|---|
| Other_name | CE2-188 | ||||
| haw28774 | |||||
| haw132952 | |||||
| cewivar00186014 | |||||
| CE01609:p.Lys666= | |||||
| R03D7.1.1:c.1998G>A | |||||
| HGVSg | CHROMOSOME_II:g.10928943G>A | ||||
| Sequence_details | SMap | S_parent | Sequence | R03D7 | |
| Flanking_sequences | tgcattccgtgtttctgttctacgcaatcaaagctggaatggacatgggaatcgtgaacgctggagctcttccagtttacgaggatattgataagccacttctgcaacttctagaagatcttcttttcaatcgggatccagaagcgaccgaaaagcttcttgtcgctgctcaagaaatgaagaaggacggaaagaaggctgacacgaagactgatgaatggagatcattgactgtagaggaacgtctgaa | tttgctctcgtgaagggagttgatcagtttgttgtcgctgataccgaagaagctagacagaatactgcgaaatatccaaggtgtgtaccgatttctgatatccataattaattactttctttcagacctttgaacgttattgaacgaccattgatggatggaatggcagtcgttggagagctgttcggagccggaaaaatgttcctcccacaagttatcaaatcagccagagttatgaagaaagcagttg | |||
| Mapping_target | R03D7 | ||||
| Type_of_mutation | Substitution | g | a | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Confirmed_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | SNP_Swan | ||
| WGS_De_Bono | |||||
| WGS_Hawaiian_Waterston | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| Laboratory | AX | ||||
| RW | |||||
| Person | WBPerson4037 | ||||
| WBPerson1562 | |||||
| Analysis | SNP_Swan | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Hawaiian_Waterston | |||||
| History | Acquires_merge | WBVar00175524 | |||
| WBVar00552817 | |||||
| WBVar01376274 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00010988 | |||
| Transcript | R03D7.1.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | R03D7.1.1:c.1998G>A | ||||
| HGVSp | CE01609:p.Lys666= | ||||
| cDNA_position | 2001 | ||||
| CDS_position | 1998 | ||||
| Protein_position | 666 | ||||
| Exon_number | 6/11 | ||||
| Codon_change | aaG/aaA | ||||
| Amino_acid_change | K | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| WBPaper00005369 | |||||
| Method | SNP_Swan |
