WormBase Tree Display for Variation: WBVar00052249
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| WBVar00052249 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00052249 | ||||
| Other_name | cbs37154 | |||||
| cb37154 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | chrV:g.7246537C>T | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc0156 | ||
| Flanking_sequences | aattctctgactttttgaacctccg | gacaaaaaatgcaaaaatgtagcac | ||||
| Mapping_target | cb25.fpc0156 | |||||
| Type_of_mutation | Substitution | C | T | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest (16) | |||||
| Polymorphic_strain_digest | CGCG | AccII, Bsh1236I, BstFNI, BstUI, FnuDII, MvnI, SelI, ThaI | 1000 | |||
| TCCGGA | AccIII, BseAI, BsiMI, Bsp13I, BspEI, BspMII, Kpn2I, MroI | 338 337 181 52 40 38 7 7 | ||||
| CCGC | AciI | 979 21 | ||||
| RAATTY | AcsI, ApoI, XapI | 526 354 43 34 33 10 | ||||
| CYCGRG | Ama87I, AvaI, BcoI, BsiHKCI, BsoBI, Eco88I, Nli3877I, NspIII | 643 209 148 | ||||
| CCSGG | AsuC2I, BcnI, CauII, EcoHI, NciI | 595 405 | ||||
| WCCGGW | BetI, BsaWI | 338 337 181 45 40 38 7 7 7 | ||||
| CCNGG | Bme1390I, BssKI, BstSCI, MspR9I, ScrFI | 595 405 | ||||
| RGCY | CviJI, CviTI | 402 322 214 41 21 | ||||
| GAATTC | EcoRI, FunII | 526 354 120 | ||||
| CAC | HindI | 197 192 138 81 76 47 43 35 25 23 23 21 18 18 15 11 10 9 9 4 3 2 | ||||
| TCNNGA | Hpy178III, Hpy188III | 288 222 181 101 52 35 34 24 15 14 14 7 7 6 | ||||
| TCNGA | Hpy188I | 246 199 174 156 107 56 56 6 | ||||
| GTNAC | MaeIII | 502 498 | ||||
| GTSAC | NmuCI, Tsp45I | 502 498 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 178 164 149 86 79 50 44 43 40 39 34 33 27 24 10 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00028907 | ||||
| Transcript | CBG06663b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG06663b.1:c.147+542C>T | |||||
| Intron_number | 4/8 | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: ssaha-SNP v1.0, ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
